Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0675 ATGGGGAACTGTTGGAGTATTCAATCAGGTTCTTCAGGCTATCATCCCAAGTCCAATACTGCCCCAAACCCCAACAATCGATCAgGGAGCATTCAGTTTTCTGCTGGTCTCAGCAATACAAGATTAATACAGAATGGCAATTCTACTTCTCTTGGGCGTAGCAGCCACTCTGGAGGAATCAGCAGGATCTTTGGGCCAAGTAGTAGCAATAACTACTCAACAGGCAATAACACAAGCACATCCCTGTGGGGCTCTGAGAATAGCCAAGCCTCTCGAGTGAGAGATGAAGAGGAGTTTCCTAATGGGCAGATCTTGGATGTTCCAGACTTGAGAGGATTTACTTTGGCAGAATTGAAGGCAGCCACCAGAAATTTCAGAGATGACACTGTGTTAGGAGAGGGGGGTTTTGGTAAAGTATACAAGGGTTTGATTGGGGATAGAGCAGCAAGGAGAAGAGGTGAGGGGTTGACTATTGCCATCAAGAAATTGGATTCTGGAAGCAGCCAAGGAGTTGCGGAATGGCAGTCAGAGGTGAATTTCTTAGGGAGGCTTTCTCATCCCAATCTTGTTAAGTTGTTGGGATTTGGGCGAGAGGATAGTGAACTATTTCTGATCTATGAATTCATACATCGTGGCAGCTTGGATAATCATCTATTTGGAAGAGGTGCAAATGTTCGGCCGCTATCTTGGGACACAAGGCTAAAGGTTATGATTGGAGCAGCTAGGGGACTGAATTTCCTTCACTCCTTGgagaagaaaattatatatagagattTTAAACCCTCAAATATACTACTTGACATGACTTATACGGCTAAGTTAGCAGACTTTGGCTTAGCCAAATCTGTTACTTCGCCTGATCAGAGTCACGTATCAACACACGTTGTGGGAACACACGGCTATGCTGCTCCTGAGTACATTGCAACAGGTCATTTGTACGTGAAAAGTGACGTGTATGGATTTGGAATTGTTTTGGTGGAGGTGCTGACTGGCAAGAGGATAGGCGATATAACGCGCCTGCGTCAGCAAATGTCCTTGAGGGATTGGCTCAAATCAAATCTACTACATAGAGGGAAAATAAGAAGCACTATGGATGCAAAGTTGGAAGGCAAGTATCCAACCAACTTAGCTTCACAAGTAGCTCAACTAGCTCTCAAATGCATCCAAGCAGAGCCCAAAGTCAGGCCATCAATGAAAGAAGTCGTTGAAACATTGGAAAATTTTGAAGCAGCTAATGACAAACCAGCTGATAACATAAGAAGGGTTACTCGTTCCCGGGCAGTGCCAGATGGTGGTTAA 1299 0.4411 MGNCWSIQSGSSGYHPKSNTAPNPNNRSGSIQFSAGLSNTRLIQNGNSTSLGRSSHSGGISRIFGPSSSNNYSTGNNTSTSLWGSENSQASRVRDEEEFPNGQILDVPDLRGFTLAELKAATRNFRDDTVLGEGGFGKVYKGLIGDRAARRRGEGLTIAIKKLDSGSSQGVAEWQSEVNFLGRLSHPNLVKLLGFGREDSELFLIYEFIHRGSLDNHLFGRGANVRPLSWDTRLKVMIGAARGLNFLHSLEKKIIYRDFKPSNILLDMTYTAKLADFGLAKSVTSPDQSHVSTHVVGTHGYAAPEYIATGHLYVKSDVYGFGIVLVEVLTGKRIGDITRLRQQMSLRDWLKSNLLHRGKIRSTMDAKLEGKYPTNLASQVAQLALKCIQAEPKVRPSMKEVVETLENFEAANDKPADNIRRVTRSRAVPDGG 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0675 432 MobiDBLite consensus disorder prediction 1 97 - -
Ssu6g0675 432 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 12 429 - -
Ssu6g0675 432 Gene3D Phosphorylase Kinase; domain 1 85 208 - -
Ssu6g0675 432 PANTHER OS01G0588500 PROTEIN-RELATED 12 429 - -
Ssu6g0675 432 ProSiteProfiles Protein kinase domain profile. 125 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0675 432 Gene3D Transferase(Phosphotransferase) domain 1 209 427 - -
Ssu6g0675 432 ProSitePatterns Protein kinases ATP-binding region signature. 131 162 IPR017441 GO:0005524
Ssu6g0675 432 Pfam Protein kinase domain 126 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0675 432 MobiDBLite consensus disorder prediction 1 89 - -
Ssu6g0675 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Ssu6g0675 432 SUPERFAMILY Protein kinase-like (PK-like) 110 408 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0675 Ssu-Chr6 10493544 10495975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0675 111 406 Receptor kinase-like Gene Family AT4G02010 46.154 2.45e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu6g0675 Pkinase 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0675 - - gmx:100813304 722.62