Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0670 ATGGAAGACGATGAAGAATGCATCACAGGGCTATGTTTGGGACTGGGAATGGGAGGGCATGTCCCAAAAAAGGAGAAGCGGAAAGAGAACAAGCCTGTGGCGTGCCTGGACTTGGCGTTTGAGCTTTGTCCAAAAGGGGAATCCATTAACGTGAATCATAATAAGGTAGAGAGAATCAGCTTGGAGAGAATCCACGAGGGACACGAGTACCCCAATGAAAAAAGCACCGATTCTGAtaacagcaacaacaataacaacaacaacggaTGCAGAAAGAAACTGAGGCTTTCCAAGGAGCAATCAGCCATGCTTGAGAACAGCTTCAAACTGCACAGCACTCTTAATCCGGTCCAGAAACAAGCACTTGCTGatcaattgaatttaaaaactagacaaGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAGCAGACAGAAGTGGACCGCGAGTTGTTGAAAAAACACTGTCAAAATCTAAGTGATGAGAACAGAAGGTTGAAGAAGGAATTGCAGGAACTACGTGCACTTAAGGTTGGACCGTCGCCGCTATGCATTCAACTATCCAAAACGGCGACTCTGACTATGTGTTCTTCGTGCGAGAAACTATTAAAGCTCAATGAAGGAAAGAACAATATAGAGTTAGAGAGTAGAAATTGA 669 0.4141 MEDDEECITGLCLGLGMGGHVPKKEKRKENKPVACLDLAFELCPKGESINVNHNKVERISLERIHEGHEYPNEKSTDSDNSNNNNNNNGCRKKLRLSKEQSAMLENSFKLHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVDRELLKKHCQNLSDENRRLKKELQELRALKVGPSPLCIQLSKTATLTMCSSCEKLLKLNEGKNNIELESRN 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0670 222 Gene3D - 97 143 - -
Ssu6g0670 222 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Ssu6g0670 222 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 7 211 - -
Ssu6g0670 222 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Ssu6g0670 222 MobiDBLite consensus disorder prediction 76 90 - -
Ssu6g0670 222 SMART halz 147 190 IPR003106 GO:0006355|GO:0043565
Ssu6g0670 222 SMART HOX_1 89 151 IPR001356 GO:0003677
Ssu6g0670 222 Coils Coil 146 180 - -
Ssu6g0670 222 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Ssu6g0670 222 PANTHER - 7 211 - -
Ssu6g0670 222 Pfam Homeodomain 91 145 IPR001356 GO:0003677
Ssu6g0670 222 CDD homeodomain 91 148 IPR001356 GO:0003677
Ssu6g0670 222 MobiDBLite consensus disorder prediction 63 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0670 Ssu-Chr6 10440322 10441591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0670 1 206 Homeobox Transcription Factor Family AT4G37790 46.250 7.22e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu6g0670 Homeodomain 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0670 K09338 - gmx:100812222 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0670 6 10440322 10441591 Ssu1g1517 1 35693976 35695158 PCT