Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0668 ATGGTTTTCCaagtttcatttttgttttccaaCATAAAAAttggcaacaacaacaaagaaatagTAAATACAAAACCAGATAGAAAAACCATCGGAAAATGGTTGCTCTTGCCGGTTGTTGAACTTAAACCTTCATATTTGGCCATGGCAATATTGACCAACACGGTTCAACCAGAATGCTTGCTTCTGTCCCCAAGAATGCCTCGAAAAATACTCCAAGAGGAACCTCCTTCATCCTCTGAGGATTTACAAATCTCCGCGACACGCCACGACCCTGGAGTGTTCTTCTTCCTTGGAGTGATTGTAGTGCTCATCATATTGCTGATTCTTGTGTTTATATTTTGGAGGCGTATTAAACGGCCAGCAAAGGTGATGGAGAACACAGCTTCAACTAGTCAACAGCATGAGGTGATGAAGATGATAGTCCCAAATATACAACAGCCAGGGCCGATGGAGTTCATTAGTGGGAACCTTCGGACAATTAGCTACTTTGACTTCCGGACATTGAGGAGGGCCACTAAGAATTTCCACCCTCGAAATCTTCTTGGAAGTGGTGGATTTGGGCCCGTCTATCAGGGAAAGTTGGCAGATGGAAGGCTTATTGCAGTCAAGACATTGTCTCTTGACAAGTCTCAACAAGGAGAAAAAGAATTTCTGGCAGAAGTGAGAATGATCACAAGCATCCAACACAAAAATCTGGTTCGCCTTCTCGGATGTTGCACAGATGGGCCTCAAAGGATACTTGTGTATGAATACATGAAAAACAGAAGTTTGGACCTCATAATATATGGAAAGAGTGATCAATTTCTGAATTGGAGCACTAGATTCCAAATTATTCTTGGAGTAGCACGGGGATTGCAATACCTCCACGAGGATTCACATTTAAGAATTGTTCACCGAGACATCAAAGCAAGCAATATTCTTCTTGATGAGAAGTTTCAGCCGAGGATTGGAGACTTTGGGCTGGCTAGGTTCTTCCCTGAAGACCAAGCTTACCTTAGCACTCAGTTCGCAGGAACTTTAGGTTATACAGCTCCTGAGTATGCCATTAGAGGAGAACTGTCCGAAAAGGCAGACATCTATAGCTTTGGAGTTCTTGTGCTTGAAATCATCAGTTGCAGAAAAAACACAGATCTTACTTTACCATCAGAAATGCAGTACCTCCCTGAATATGCATGGAAACTTTATGAGAAGTCAATGTTGATAGAAATTGTAGATCCAAAGCTAGTAGAACATGGCATAGAAGAAAAGGATGTTATGCAAGCATTCCACGTGGCCTTATTATGCCTTCAGCCACATGCAGATTTGAGACCTGCCATGTCAGAGATCGTAGCAACGTTGACATTCAAAGTTGAAAAGGTTACAACACCAATGAGGCCAGCCTTCCTTGATCGAAGGCGCGTAATGGATGATGAGAACCACTCTTGGGAAGCCATATCCGAGGCAGTGGCCAGTGATTCTGCCTCCCCACGTAAAGCATCAATGCTCTAG 1491 0.4205 MVFQVSFLFSNIKIGNNNKEIVNTKPDRKTIGKWLLLPVVELKPSYLAMAILTNTVQPECLLLSPRMPRKILQEEPPSSSEDLQISATRHDPGVFFFLGVIVVLIILLILVFIFWRRIKRPAKVMENTASTSQQHEVMKMIVPNIQQPGPMEFISGNLRTISYFDFRTLRRATKNFHPRNLLGSGGFGPVYQGKLADGRLIAVKTLSLDKSQQGEKEFLAEVRMITSIQHKNLVRLLGCCTDGPQRILVYEYMKNRSLDLIIYGKSDQFLNWSTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLPSEMQYLPEYAWKLYEKSMLIEIVDPKLVEHGIEEKDVMQAFHVALLCLQPHADLRPAMSEIVATLTFKVEKVTTPMRPAFLDRRRVMDDENHSWEAISEAVASDSASPRKASML 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0668 496 CDD STKc_IRAK 182 448 - -
Ssu6g0668 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Ssu6g0668 496 SUPERFAMILY Protein kinase-like (PK-like) 154 450 IPR011009 -
Ssu6g0668 496 Gene3D Transferase(Phosphotransferase) domain 1 253 460 - -
Ssu6g0668 496 Pfam Protein tyrosine and serine/threonine kinase 180 447 IPR001245 GO:0004672|GO:0006468
Ssu6g0668 496 Gene3D Phosphorylase Kinase; domain 1 151 252 - -
Ssu6g0668 496 SMART serkin_6 176 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0668 496 PANTHER RECEPTOR-LIKE KINASE 155 464 - -
Ssu6g0668 496 ProSiteProfiles Protein kinase domain profile. 176 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0668 496 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 155 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0668 Ssu-Chr6 10391603 10395845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0668 164 463 Receptor kinase-like Gene Family AT1G56120 49.667 6.22e-100 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu6g0668 PK_Tyr_Ser-Thr 8.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0668 - - ccaj:109792436 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0668 6 10391603 10395845 Ssu1g1518 1 35746100 35750174 PCT