Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0661 aTGTGTGCGTCCATCATGATTCCAGCCTATCGCCATTCAGTATCTTCTGTTATGCCTCTGGATCTTAATGAAGATCAAAACCACGAGCTCTTCACTCCAAATCATCACTCCTCCTCTTCGTTTTCTTCTCTGTCATCATATCCTATTCTCTTCAACCCGTCAGATCAAGATCAAGAAACGGGATCATACTACCGAAAACCAGCAAAGCACTTACCAAGTGATGAAGAGGCTGAGAAGATTATTCCTACTAGTGGATCATGGGATCACTCGGTGGCAGAAAGTGAGCACAAGGTGACAGTttggaagaaagaagagaggaaTGAAAATCATGAAGCAGCTGCTGAGGATGGTTCGGTGAAGTGGATGCCTTCAAAGATGAGAATGATGCGGAAGATGATGGTGTCCGATCAAGCTGATGCATATGCTACAGACAACACTAGGCACAAGTTTGAAGATCAAAAACAACCATTGTCACTGCTTGGAACTGATCATAATAGCAGCAACAACTATTCAAACCACAGTAATAACACTGTTAGGGTTTGTACTGATTGCCACACCACTAAGACCCCCCTGTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTTTGCAACGCCTGTGGGATTCGACAAAGGAAGGCGAGACGTGCCATGGCAGCTGCGGCTGTAGCATCGGGAAATGGAACGGTTATCGGGGAAGCTGAGACATCTGTGAAGGGAAAGAAGTtgcagaagaaagagaagaagtcGAGAATTGAGGGTGCAGTACAGATGAAAAAGAAGCGCAAACTTGGAGCCAAGCCATCTCAAAGTAGAAACAAGTTTGGTTTTGAGGATTTGACATTACGCTTAAGAAAGAACTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTGCTCATGGCTTTATCTTATGGCCTTGTTCATGGATGA 945 0.437 MCASIMIPAYRHSVSSVMPLDLNEDQNHELFTPNHHSSSSFSSLSSYPILFNPSDQDQETGSYYRKPAKHLPSDEEAEKIIPTSGSWDHSVAESEHKVTVWKKEERNENHEAAAEDGSVKWMPSKMRMMRKMMVSDQADAYATDNTRHKFEDQKQPLSLLGTDHNSSNNYSNHSNNTVRVCTDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAVASGNGTVIGEAETSVKGKKLQKKEKKSRIEGAVQMKKKRKLGAKPSQSRNKFGFEDLTLRLRKNLAMHQVFPQDEKEAAILLMALSYGLVHG 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0661 314 Pfam GATA zinc finger 181 214 IPR000679 GO:0006355|GO:0043565
Ssu6g0661 314 Gene3D - 171 263 IPR013088 GO:0006355|GO:0008270
Ssu6g0661 314 SMART GATA_3 175 226 IPR000679 GO:0006355|GO:0043565
Ssu6g0661 314 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 6 314 - -
Ssu6g0661 314 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 6 314 - -
Ssu6g0661 314 ProSitePatterns GATA-type zinc finger domain. 181 206 IPR000679 GO:0006355|GO:0043565
Ssu6g0661 314 ProSiteProfiles GATA-type zinc finger domain profile. 175 211 IPR000679 GO:0006355|GO:0043565
Ssu6g0661 314 MobiDBLite consensus disorder prediction 50 76 - -
Ssu6g0661 314 MobiDBLite consensus disorder prediction 240 259 - -
Ssu6g0661 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 215 - -
Ssu6g0661 314 MobiDBLite consensus disorder prediction 240 271 - -
Ssu6g0661 314 MobiDBLite consensus disorder prediction 62 76 - -
Ssu6g0661 314 CDD ZnF_GATA 180 208 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0661 Ssu-Chr6 10328249 10329548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0661 20 314 C2C2-Gata Transcription Factor Family AT4G26150 32.312 2.19e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu6g0661 GATA 5.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0661 - - gmx:100810698 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0661 6 10328249 10329548 Ssu6g0661 6 10328249 10329548 ECH
Ssu6g0661 6 10328249 10329548 Ssu1g1522 1 35796679 35797405 PCT