Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0657 ATGGGGGTGGTTTTGGCTTTGATGCTGCAGCTCTGCATCATTGGCTTTGCTGTGACAGCCCAAGAATCCAAAGGGTCCATTATATCCCCATCTCCAGCATTTCTTCCTGTCCTTCCTCCTAGAGCTGAAACAGTTGGTCCTATTTATCATGGAGAGGGAAGCAAAGCACCAAACCTACCATCAGATGGAGATGGGTTTGTTATATCCCCATCTCCGGCTAATTTACATGCGTATTATTCCCCTATCTCTCCAGCAGTATCAAATGGGCCATTCTTTCAGCCTCCGAAGACATTACCACCTCCTCCAGCAGCTCCATCACCTCAGAAGATTGAAGACATTGAACCATCCAAATCTCCCAGTCCAAGCACCATAGCATTATCACCAGCATACGAGGTTGTTCCTTCACCATCAGCAGTTCAAGGGAATAAGCCACCATCTGTAAAAACAAGTCCGCCTCAAAGCAAAGCACCTGCTGTTAGGCTTCCTGTCTCCACACCAACTGCTCCAGCTCCAGTTGCAATATCTTTTGGCAGATCACCAGAAACTTCACCAGTCAGCCAACCAATTGAACACGGAAATTTGGCACCTAATGTTGATAGTAGGAATGCAAAAAAGAGTCACCTTGCAGGGCCATTTTCACCGGCACCAGGAGCAGTACCTTCTCACAATTTGCCCAAAAATTCATCAGGCAGCCAACCAACTGAACATGGAACTTTTCCTCCTAAAGAGGGTACAAATAAAGGTCAGAGCCCGGAATCAATTTCACCAGCCCCTATAGCAGTTAATTTGCCAAAAGAATCACCTGTCAGCCAACCTTCTGAACATGGAAGTTTTCCACCAATTGTTCATCAAAGGAATGCAAATATGGGTCACACCTTGAAGCCTGTTTCACCAGCTTCAGTTGCTATACCTCCCGcaacttacaaaaaaaattcaacagtCAGTGAACCAATTCAGCATGGAAGCATTCCACCTAATGTTCATAAAAGCAATACGAATAAAGGTCACACCTCTGAGCCAGTTTCACCAGAATCTGTCGCATCCCCACCATGGAAAGTGAAAAATAACCCACCAAAGGTCCACCCTTTTGTACCAACAATAACTCCATCCATATTACCcgTACCAGTTACATCACCACCATGTACATTTCCATTAAAACCACCATTGGTCCATCCAATTGTTCCAGCAGTATCTCCGTCAAAATTACCAGCACCTGTTTCCTCTCCCACTCCTTTGAGAAGCATCAATTGGAAGAAAGGCGGAGCACCAGTTGCTGCACCTTTGTACAAAAATCCAAAGCCACTTCCAGCTGTAATACACCCCCCTGCTCAAGAAGCAATTCCTCCCTTATTGCCGCCAACAAGTGGACAAAGACATCATGTTTCACCACCAATGAACTCAGATTCTTCAGTTTCCCCATTCTCTTCCCCTATTCATTCAAACATGGGTTTGTCACCTGCTGCTTCTCCATCAATCAAATTTGCACCTCACCCAACCAGAATATCTCCATCTGAGTCTTCTTCCAAGAGACCTAAGATGCCTCTCCTGCCTCAAGTCCAAGCGCTGCCACCCCCACCTCCTAATGAAGATTGTTTATCAACTGTCTGCACAGAACCTTATACAAATTCTCCACCCGGAGAACCTTGCAGATGTGTCTGGCCCATGCGAATTGGTCTTCGCCTTAGTGTTTCTCTTTATACCTTCTTCCCTTTGGTTTCAGAACTAGCTTCTGAAATTGCCACTGGGGTTTTCATGAAACAAAGTCAAGTTCGCATTATGGGAGCAAATGCAGCAAACCAACAACCAGAGAAAACTGTTGTCCTTATTGATTTGGTGCCACTTGGGGAAGAGTTTGATAATACTACAGCCTTTTTGACTTCTTACAAATTTTGGCACAAAAAGTTTCTTATAAAAGCTTTCTACTTTGGAGACTATGACGTGTTATATGTGAGTTATCCAggtttgCCTCCTTCTCCTCCTTTACCTGCTTCAAGCGTTAACATGTTTGATGGTGGTCCATATTCCACTGATGGCAATAATGGAAGGACAATAAAGCCCTTTGGGGTTGACATACAGAAGAGACAGCATAAAGGTGGACTTAGCAGAGGCATAATTGCCATTATTGCTGTTTCAGTTTCTTTAGCAGTTGTTTTATGTGCTGCTGCTGCCTGGGTCATGTTCAAGTTCAGAGATCATGTTAGTCAGCCAGCATCAACCCCACGGCAGCTTTCGCCACCTTCTCTTACCAAAGAACCAGGTCCTGCTGGATCACTTAGAGGTGGGGGAGTTGGTTCTCTTTCCACATCATTTCGATCTAGCATTGCTGCTTATACAGGATCTGCTAAGACTTTCAGTATGAATGACATTGAGAAAGCTACTAATATTTTCCATTCTTCAAGAATACTTGGAGAAGGCGGTTTTGGGCGTGTTTACAGTGGTATCCTTGAAGATGGGATGAAAGTGGCAGTGAAGGTTCTAAAGAGGGAAGACCATCATGGTGATCGTGAATTCTTAGCTGAAGTTGAGATGCTTAGTCGTCTTCACCATAGAAATTTGGTCAAGTTAATTGGTATATGTACCGAAGACAGCCTCCGCTGCTTGGTTTATGAACTCATTCCAAATGGAAGCGTGGAATCCCATTTACATGGGGTTGACAAGGAAAGCAGCCCACTTGATTGGGGTACCCGGATGAAGATAGCTCTTGGTGCAGCTCGTGGTCTAGCTTATCTGCACGAAGATTCAAGTCCCCGTGTGATACATAGGGACTTCAAGTCTAGCAACATATTGTTGGAAGATGATTTTACACCTAAAGTATCTGATTTTGGATTGGCTCGAACAGCAACGGATGAGGGGAGCAAACACATATCAACACGTGTCATGGGAACTTTTGGttatgTGGCTCCGGAGTATGCAATGACTGGGCATCTTCTTGTTAAGAGTGATGTTTACAGCTATGGTGTTGTTCTTCTTGAGCTTTTGACTGGAAGAAAACCTGTAGACATGTCACAAGCTCCTGGTCAAGAGAATCTTGTTGCTTGGGCTCGTCCACTTCTCGCAAGTAAAGAAGGATGTGAAGCAATGATAGACCCATCTCTGGGAGCTGACGTGCCTTTTGACAGTGTGGCTAAAGTTGCAGCCATTGCTTCAATGTGTGCGCAACCAGAGGTATCTAACCGCCCTTTCATGGGTGAGGTTGTGCAGGCTTTAAAGCTTGTATGTAATGAATGTGATGAGGCAAAAGAAGAAGCAGGTTCAACAAGTTCTAGCCTGGAGGATTTAACTGTTGATTTAGATCTGGGAATCAGCACTGTTTCTGATCAGCTACCGGATAATTTCCAAAGCCAATTCTCGGCTACTAACTTTGATTCTGGAGTTGATATTGAAAGAGGCTTGTCAGCATCAGAACTGTTCAGTTCATCAGCAAGATTTGGCCGGGTGGAGTCTGGATCATTTAGAAGAAACTCTTATTCAGGTCCTCTGAGAACCGGAAGAAGCCGGCGGTTGTGGCAGATAATTAGAAGTCTTTCTGGTGGCAGTGTCAGCGAACATGGAACTATGTTAAAGTGA 3567 0.4424 MGVVLALMLQLCIIGFAVTAQESKGSIISPSPAFLPVLPPRAETVGPIYHGEGSKAPNLPSDGDGFVISPSPANLHAYYSPISPAVSNGPFFQPPKTLPPPPAAPSPQKIEDIEPSKSPSPSTIALSPAYEVVPSPSAVQGNKPPSVKTSPPQSKAPAVRLPVSTPTAPAPVAISFGRSPETSPVSQPIEHGNLAPNVDSRNAKKSHLAGPFSPAPGAVPSHNLPKNSSGSQPTEHGTFPPKEGTNKGQSPESISPAPIAVNLPKESPVSQPSEHGSFPPIVHQRNANMGHTLKPVSPASVAIPPATYKKNSTVSEPIQHGSIPPNVHKSNTNKGHTSEPVSPESVASPPWKVKNNPPKVHPFVPTITPSILPVPVTSPPCTFPLKPPLVHPIVPAVSPSKLPAPVSSPTPLRSINWKKGGAPVAAPLYKNPKPLPAVIHPPAQEAIPPLLPPTSGQRHHVSPPMNSDSSVSPFSSPIHSNMGLSPAASPSIKFAPHPTRISPSESSSKRPKMPLLPQVQALPPPPPNEDCLSTVCTEPYTNSPPGEPCRCVWPMRIGLRLSVSLYTFFPLVSELASEIATGVFMKQSQVRIMGANAANQQPEKTVVLIDLVPLGEEFDNTTAFLTSYKFWHKKFLIKAFYFGDYDVLYVSYPGLPPSPPLPASSVNMFDGGPYSTDGNNGRTIKPFGVDIQKRQHKGGLSRGIIAIIAVSVSLAVVLCAAAAWVMFKFRDHVSQPASTPRQLSPPSLTKEPGPAGSLRGGGVGSLSTSFRSSIAAYTGSAKTFSMNDIEKATNIFHSSRILGEGGFGRVYSGILEDGMKVAVKVLKREDHHGDREFLAEVEMLSRLHHRNLVKLIGICTEDSLRCLVYELIPNGSVESHLHGVDKESSPLDWGTRMKIALGAARGLAYLHEDSSPRVIHRDFKSSNILLEDDFTPKVSDFGLARTATDEGSKHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQAPGQENLVAWARPLLASKEGCEAMIDPSLGADVPFDSVAKVAAIASMCAQPEVSNRPFMGEVVQALKLVCNECDEAKEEAGSTSSSLEDLTVDLDLGISTVSDQLPDNFQSQFSATNFDSGVDIERGLSASELFSSSARFGRVESGSFRRNSYSGPLRTGRSRRLWQIIRSLSGGSVSEHGTMLK 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0657 1188 Gene3D Phosphorylase Kinase; domain 1 768 871 - -
Ssu6g0657 1188 SUPERFAMILY Protein kinase-like (PK-like) 776 1069 IPR011009 -
Ssu6g0657 1188 ProSitePatterns Serine/Threonine protein kinases active-site signature. 918 930 IPR008271 GO:0004672|GO:0006468
Ssu6g0657 1188 MobiDBLite consensus disorder prediction 459 487 - -
Ssu6g0657 1188 MobiDBLite consensus disorder prediction 222 256 - -
Ssu6g0657 1188 MobiDBLite consensus disorder prediction 449 526 - -
Ssu6g0657 1188 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 355 1188 - -
Ssu6g0657 1188 MobiDBLite consensus disorder prediction 139 153 - -
Ssu6g0657 1188 MobiDBLite consensus disorder prediction 310 350 - -
Ssu6g0657 1188 ProSitePatterns Protein kinases ATP-binding region signature. 802 824 IPR017441 GO:0005524
Ssu6g0657 1188 MobiDBLite consensus disorder prediction 93 108 - -
Ssu6g0657 1188 PANTHER OS01G0750732 PROTEIN 355 1188 - -
Ssu6g0657 1188 MobiDBLite consensus disorder prediction 90 281 - -
Ssu6g0657 1188 Pfam Protein tyrosine and serine/threonine kinase 798 1069 IPR001245 GO:0004672|GO:0006468
Ssu6g0657 1188 MobiDBLite consensus disorder prediction 310 344 - -
Ssu6g0657 1188 ProSiteProfiles Protein kinase domain profile. 796 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0657 1188 MobiDBLite consensus disorder prediction 736 764 - -
Ssu6g0657 1188 CDD STKc_IRAK 802 1070 - -
Ssu6g0657 1188 Gene3D Transferase(Phosphotransferase) domain 1 872 1094 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0657 Ssu-Chr6 10213153 10221424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0657 432 1185 Receptor kinase-like Gene Family AT5G56890 61.599 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Ssu6g0657 PK_Tyr_Ser-Thr 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0657 - - gmx:100816296 1873.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0657 6 10213153 10221424 Ssu6g0657 6 10213153 10221424 ECH