Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0656 ATGGCCCCTAGAATCCTACTATGCGGCGACGTTTTGGGGCGCCTCAACCAGCTCTTCAAGCGCGTCTCATCGGTGAACAAATCTGCAGGTCCATTCGACGCGCTGTTGTGCGTGGGTCAGTTCTTCCCGGACTCACCGGAGCAGGTGGAGGAGTTTACGGCGTACATCGAAGGTGGGTCCCAGATTCCCCTCCCAACTTACTTCATCGGCGACTACGGGGTCGCCGCCCCGAAAATTCTCTTGCAAGCTTCCAAGGACTCCGCCAACCGGGGTTTCAAGATGGACGGCTTCAAGATTTGCGATAACTTGTATTGGTTGAAAGGCAGTGGCAAATTCCCCCTCTTCGGGTTATCCGTGGCCTATTTATCTGGTAGCAAGTCATCCGGTGTTCAACAGTTTGGAACTTACACTGAAGACGATGTTGATGCTTTGCGAGCAATTGCTGAGGAACCTGGAGTTGTTGATTTGTTCTTGACTAACGAATGGCCAAGTGGAGTGATCAATAGAGCAGCTGCTTCGGACATTCCTGCTGGACTCTCTGATGCTGTAGGCAGTGATTCAACCATATCGGAGTTAGTACAAGAGATCAAACCACGtTATCACATTGCAGGCAGTAAAGGTATTTACTATGCCCGGGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTTGCATCTGTTGGAAATAGAGATAAACAGAAATTTATTCATGCAATCTCCCCCACACCTGCATCCACCATGTCTTCAACTGAGATTGCTGTGAAAACCACAAATACCACCTTATCGCCATACACATTTGTGGAGATAAGAACTTCTCCAACGGATTCCACAAAGAGATCCAGTGATTCTGTCTCTGATTCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACACGAAGGTGGACACGGTGATAAGATGTGTTTCAAATTTGTTTCTTCTGGCTCTTGTCCACGAGGAGAGAAGTGCAATTTTCGACACGATATAGATGCAAGGGAGCAGTGTATGAGAGGTGTTTGTTTCGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTCAGCACAGCTTGCAGGATGAAGGCAACAGGCATCCTTCTAGGAGGCCTGCTGAAAATACTAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGGAGTCACATTTAGTCATAAGCATTGGGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCACGTACTGATAGTACCAGTTGAGCATATGCCTAGTACCTTATCTGTGTCTTCTGAATCTGAAATTGAGCTCTCTAGGTTTCAGAACAGTCTCAAGAGTTACTGCAAGAGCCAAGAGAAGGAAGTCATCTTTTTTGAGTGGGCCTCCATACGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCACTTATGGTTGAGAAAGTTTTCAATTTAGCTGCTCAAAAGTTGGGATTTAAATTTGTGGCTAAGAAATTTGATAGCATTTTTGATGGAAGAAAGTTTTTGAAGTCGCAAATTGATGGGAATTCAAGCTTGTTCTATGCTCAAGTCCCAGGAGGCACAATTCTGCTGCATCAtgttgaagagaaagaaagattcCCTGCCCAATTTGGTCGTGAGGTTCTGGCCGGGTTGCTTAATATGGCAGATAATGCTGATTGGAGGAATCGCAAACATAGCAAAGATGAAGAAATGAAAATCGTTGAAGATTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTGA 1809 0.4439 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPEQVEEFTAYIEGGSQIPLPTYFIGDYGVAAPKILLQASKDSANRGFKMDGFKICDNLYWLKGSGKFPLFGLSVAYLSGSKSSGVQQFGTYTEDDVDALRAIAEEPGVVDLFLTNEWPSGVINRAAASDIPAGLSDAVGSDSTISELVQEIKPRYHIAGSKGIYYAREPYSNVDAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSTEIAVKTTNTTLSPYTFVEIRTSPTDSTKRSSDSVSDSQYWRYDVSQKRQKHEGGHGDKMCFKFVSSGSCPRGEKCNFRHDIDAREQCMRGVCFDFLNKGKCERGPDCNFQHSLQDEGNRHPSRRPAENTRSKECWFCLSSPNVESHLVISIGENYYLALAKGPLVEDHVLIVPVEHMPSTLSVSSESEIELSRFQNSLKSYCKSQEKEVIFFEWASIRGTHANLQAIPIPSSKALMVEKVFNLAAQKLGFKFVAKKFDSIFDGRKFLKSQIDGNSSLFYAQVPGGTILLHHVEEKERFPAQFGREVLAGLLNMADNADWRNRKHSKDEEMKIVEDFKSRFQEYDPNC 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0656 602 ProSiteProfiles Zinc finger C3H1-type profile. 346 369 IPR000571 GO:0046872
Ssu6g0656 602 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 601 IPR040194 -
Ssu6g0656 602 Pfam Protein similar to CwfJ C-terminus 2 519 599 IPR006767 -
Ssu6g0656 602 SUPERFAMILY HIT-like 387 458 IPR036265 -
Ssu6g0656 602 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Ssu6g0656 602 SMART c3hfinal6 311 336 IPR000571 GO:0046872
Ssu6g0656 602 Gene3D - 298 370 - -
Ssu6g0656 602 PANTHER CWF19-LIKE PROTEIN 1 1 601 - -
Ssu6g0656 602 SUPERFAMILY CCCH zinc finger 312 338 IPR036855 GO:0046872
Ssu6g0656 602 CDD MPP_CWF19_N 6 232 - -
Ssu6g0656 602 ProSiteProfiles Zinc finger C3H1-type profile. 314 337 IPR000571 GO:0046872
Ssu6g0656 602 Pfam Protein similar to CwfJ C-terminus 1 381 496 IPR006768 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu6g0656 CwfJ_C_1 3.6e-38 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0656 K24939 - gmx:100782106 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0656 6 10199737 10205134 Ssu6g0656 6 10199737 10205134 ECH