Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0646 ATGGATGGCGTCTTCGCCCTCCCTGAAGCCGCCAGAGCTGATTTTCTCCGCTCTCTGATGCACTCTTTTGGTTGCACTTACTCGTTTGTTTTTCTTGGATGGGTTCTACGATGTAAGGAACAACCAACCAAGCTCTTCTTTGGGGAGTGTAGCCGAAACACTTCTTCACCAATACCGGGctgtGTTCCTGGAGTGGCCTTCAAGAACCACCTTCCCTACATAGAGCTGCAACAATTGGATCTTCTAAGACTGACATCGACAGAAATACAAACACAATTCTTTCAAATTGCTGTTTTCATGGGTtgcaaaaaaggagaaattgagCTTGGGTTCTCGAACATGCCTCAAGCCGACATTCAGACAGCACTTAAGAATTTATTTCCAGAAGATTTCCAATCAACAACTGATCATCAGAATCCACATTCATCATCGTCTTCTTTCATATCATTATCTACAGGTAGCCCTGAATGTTCATCCCTGTTACTCAGTATTCCGGGCACTTCCCAGTCCCACTTTCCTGAAACCCATGGTGTGGTTCCTACACAAACTAGCCCACCACACCAACAAAGCATCCAAGCATTAGCTCAAGTCAATATTCCACGCTATTTCCCCACACCAGAGGGTGAACATGGAGCAATAGTAAGAGCACTTCTCCATGTTATATCTTCGCCTTCTTCTTCAACTTCACAGCAGCATCAACCCCAACAAAATTTTCCCAATTACGCTTCAGTAATACATCCAGTAGATACAGCTTTCAAGATTTATGGACCAGATATAAGCACACCCCATATGGGGTCCAATTTTCGCAACAATAGATCATTTGCATTCTTtagaaacttaaatttaatgagaatgagagaacgCAACATTATTCAGGCAGCCCGTCCCTTTAATATCCAGCAGTATCGTGCGATATCAGAGCGAAGAAGGCGTGAAAAACTCAGTAAGAGTTTTCAGGCACTTAGAGCACTTCTTCCTCCGGGAActaagAAAAGCAAAGCGTCGATCCTTACAACAGCAAAAGAGACAATGAGATCTTTGATGGATGAAATTGAAAAGCTTAACATAAGAAATCAGCAGCTGATGACAGTTTTGCCAGCCAAAGAAGCTACTAGTACAGAAGAAAACAAAGGTAGCTCCTCAAATGAAAGATTAAGTGTTCGGGTTTCGCATGTATTGGAATCGAGTTCATCAGAAGAGCAAATGGTGGACTTGCAAGTGACGGTGAGAGGAGAAAGTTCTCGAGTTGATGTATTGATTCGCTTGTTGGAATTCTTAGAACGCGTTCAGAACGTAAACTTGATTTCCATGGACGCAAACAACCATATCACAGGAGGGACAGCCATTAATCAATTAACCTTCAGGCTGATGGTTATTGAGGGCAGTGAATGGGACCAGCTTGCCTTCCAGGAAGCAGTCAGAAGAGTAGTTGCTGACCTCAACCAATTGACGTCATGTGCTTGCCGAGTTATACCTCAGTTAATCGATCTTTGTGATTACTTGATGAGTAGATCAGATTCGTCAACGAAGGGAAGCTCAAAAGTTGTAACTAGATGGAAGTTGGAGATCATGAGAATGGATAATCATGGACGAGTAAGTGGGAACGGATGGTTATCAGAGCAGTTATGTCAAGTTAGTTCATACAAAAGGGTGGATACCAAGTTATTTGACTTGAGCGTTGAAGTGCTATTGCAAGTACCACCCCCATCTCTAAGAAAAGATCAGAAGAATGTGAAGGAAGTACAAATCGAAGAAGAGAAACAGAAGATTGGACATTTGTTGTACTCAAAGGAGGAGTAA 1800 0.4139 MDGVFALPEAARADFLRSLMHSFGCTYSFVFLGWVLRCKEQPTKLFFGECSRNTSSPIPGCVPGVAFKNHLPYIELQQLDLLRLTSTEIQTQFFQIAVFMGCKKGEIELGFSNMPQADIQTALKNLFPEDFQSTTDHQNPHSSSSSFISLSTGSPECSSLLLSIPGTSQSHFPETHGVVPTQTSPPHQQSIQALAQVNIPRYFPTPEGEHGAIVRALLHVISSPSSSTSQQHQPQQNFPNYASVIHPVDTAFKIYGPDISTPHMGSNFRNNRSFAFFRNLNLMRMRERNIIQAARPFNIQQYRAISERRRREKLSKSFQALRALLPPGTKKSKASILTTAKETMRSLMDEIEKLNIRNQQLMTVLPAKEATSTEENKGSSSNERLSVRVSHVLESSSSEEQMVDLQVTVRGESSRVDVLIRLLEFLERVQNVNLISMDANNHITGGTAINQLTFRLMVIEGSEWDQLAFQEAVRRVVADLNQLTSCACRVIPQLIDLCDYLMSRSDSSTKGSSKVVTRWKLEIMRMDNHGRVSGNGWLSEQLCQVSSYKRVDTKLFDLSVEVLLQVPPPSLRKDQKNVKEVQIEEEKQKIGHLLYSKEE 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0646 599 MobiDBLite consensus disorder prediction 131 150 - -
Ssu6g0646 599 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 364 IPR036638 GO:0046983
Ssu6g0646 599 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 298 347 IPR011598 GO:0046983
Ssu6g0646 599 SMART finulus 304 353 IPR011598 GO:0046983
Ssu6g0646 599 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 480 - -
Ssu6g0646 599 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 480 IPR044658 -
Ssu6g0646 599 Coils Coil 337 364 - -
Ssu6g0646 599 CDD bHLH_AtbHLH_like 305 354 IPR045239 -
Ssu6g0646 599 Pfam Helix-loop-helix DNA-binding domain 304 347 IPR011598 GO:0046983
Ssu6g0646 599 Gene3D - 301 371 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0646 Ssu-Chr6 10037407 10046773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0646 1 480 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 34.909 7.31e-60 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g0646 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0646 - - gmx:102670282 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0646 6 10037407 10046773 Ssu1g1534 1 36458447 36462575 PCT