Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0645 ATGGATGGCGTCCTCGCCCTCCCTGAAGCCACCAGAGCTGATTTTCTCCGCTCTCTGGTGCAATCTTTTGGCTGCACTTACGTTTGTCTGTGGCGATATGATTCCAATTTATCCaacTGTGTTCCTGGAGTCGCTTTCAGGAATCACCTTCCCTACATAGAGCTGCAACAATTGGACCTACTAAGACTGACATCAACAGAAATACAAACACAATTCTTTCAGGAAGCAAGGATTGAGATTGCTGTTTTCGTGGGTtgcaaaaaaggagaaattgagCTTGGGTTCTCGAACATGCCTCAAGCCGACATTCAGACAGCACTTAAGAATTTATTTCCAGAAGATTTCCAATATTCAACAACTGATCATCAGAATCCACattcatcatcatcttctttcATATCATTATCTAGAGGTAGCCCTGAATGTTCATCCCTGTTACTCAGTATTCCGGGCACTTCCCAGTCCCACTTTTCTGAAACCCATGGTGTGGTTCCCACACAAACTAGCCCACACCAACAAAGCATCCAAGCATTAGCTCAAGTCAATATTCCAAGTTATTTCCCCACACCAGAGGGTGAACATGAAGCAATAGTAAGAGCACTTCTCCATGTTATATCTTCGCCTTCTTCTTCAACTTCACAGCAGCATCAACCCCAACAAAATTATCCCAATTATGCTTCAGTAATACATCCAGGAGATACAGCATTCAAGAGATATAGACCAGATATAACACCCCATATGGGGTCCAATTTTCGCAGGAAAAGCCTGCAGAATAGATCATTTGCATTCTTtagaaacttaaatttaatgagAAAGAGAGAACGCAATATTATTCAAGCAGCCCGTCCCACTAGTACCCAGCAGCATCATGTGATATCAGAGCGAAGAAGGCGTGAAAAAATCAGTGAGAGTTTTCAGGCACTCAGAGCACTTCTTCCTCCGGGATCTAAgaaaaataaagctTCGATCCTTACAACAGCAACAGAGACAATGAGATCTTTGATGGATGAAATTGAAAAGCTTAACGTGAGAAATCGGCAGCTGATGACAGTTTTGTCAACCAAAGAAGCTACTAGTACTGAAGAAAACAAAGGTAGCTACTCAAATGAAAGATTGAGTGTTCGGGTTTCGCATGAATCGGAATCGAGTTCATCAAAACAGCGAATGGTGGACTTGCAAGTGACGGTGAGAGGAGAAAGTTCTCAAGTTGATATATTGATACGCTTATTGGAATTCTTAGAACGGGTTCAGAACGTAAACTTGATTTCCATGGACGCAAACAATCATGTTACAGGAGGGACAACCATTAATCAATTAACCTTCAGGCTGAGGATTATTGAGGGCAGTGAATGGGACAAGCATGTCTTCCAGGAAGTAGTCAGAAGAGTGGTTGCTGACGTAATACAATGGCAACTTGACCAATAA 1425 0.4056 MDGVLALPEATRADFLRSLVQSFGCTYVCLWRYDSNLSNCVPGVAFRNHLPYIELQQLDLLRLTSTEIQTQFFQEARIEIAVFVGCKKGEIELGFSNMPQADIQTALKNLFPEDFQYSTTDHQNPHSSSSSFISLSRGSPECSSLLLSIPGTSQSHFSETHGVVPTQTSPHQQSIQALAQVNIPSYFPTPEGEHEAIVRALLHVISSPSSSTSQQHQPQQNYPNYASVIHPGDTAFKRYRPDITPHMGSNFRRKSLQNRSFAFFRNLNLMRKRERNIIQAARPTSTQQHHVISERRRREKISESFQALRALLPPGSKKNKASILTTATETMRSLMDEIEKLNVRNRQLMTVLSTKEATSTEENKGSYSNERLSVRVSHESESSSSKQRMVDLQVTVRGESSQVDILIRLLEFLERVQNVNLISMDANNHVTGGTTINQLTFRLRIIEGSEWDKHVFQEVVRRVVADVIQWQLDQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0645 474 Coils Coil 324 351 - -
Ssu6g0645 474 SMART finulus 291 340 IPR011598 GO:0046983
Ssu6g0645 474 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 467 - -
Ssu6g0645 474 CDD bHLH_AtbHLH_like 290 341 IPR045239 -
Ssu6g0645 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 285 334 IPR011598 GO:0046983
Ssu6g0645 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 350 IPR036638 GO:0046983
Ssu6g0645 474 Pfam Helix-loop-helix DNA-binding domain 288 334 IPR011598 GO:0046983
Ssu6g0645 474 MobiDBLite consensus disorder prediction 355 385 - -
Ssu6g0645 474 Gene3D - 284 359 IPR036638 GO:0046983
Ssu6g0645 474 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 467 IPR044658 -
Ssu6g0645 474 MobiDBLite consensus disorder prediction 355 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0645 Ssu-Chr6 10019691 10026542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0645 11 467 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 36.667 1.15e-74 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g0645 HLH 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0645 - - gmx:102670282 581.252