Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0642 ATGGGAGAAGAAGTGGCAAGAGTGAAAGCAGAGTTGTTCGACGAATGCGAAGGCGATCGCCACGACGACGTTTTGAGCGAGAGCAAGGACTCGGGAGTGACGGAAGAAGCAACGGCTCACGTGAAAGAAGAGGCGGATGACGCCGCCGTTAACGGGTCGTCATCATTGTGGATGGATCAGTTGCCAAAACCAAAACCGATGGAAGGGTTGCACGAGGTGGGTCCACCACCGTTCCTCAAGAAGACCTTCGAAATGGTGGAGGACCCTGACACCGACCCCATTGTGTCGTGGAGCCAAACTCGCGATAGTTTCATCGTTTGGGACTCTCACGAATTATCCAAAACCCTTCTCCCCAAGTACTTCAAGCACAGCAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGCTTTAGAAAGGTTGATTCGGACCGCTGGGAGTTTGCAAACGAAGGGTTCCAAGGAGGGAAGAAACATTTGCTGAAGAACATAAGGAGAAGGAGTAAGTATAACAAACTGCATCCGGGACCGGGAGCATTCAATTTGATGAAGCCGGGCCTGGAGGCTGAAGTGGAGAAACTGAAGAAGGACCAGAGCATTTTGAAGGTGGAAATTCTGAAGCTGAGGCAGCAGCAGGAGAATTCGCATGTTCAACTCACAAATGTTCAGGAGAGAATTCGGAGTGCAGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACCAGAAAGGCTAGAAGGCCTGTGTTTGTAGAGCAGTTAATCCAAAAGATTAGGCGAAAAAGAGAGCTTGATGGTAATGACGTGGCTAAGAGACCCAGATTGATGGGAACCCCGTGCCATGTAACCACCCTCCCTAAGACCATGGAGACAACCCCTAATGTTGATTACAGACACCAAGGTCATAAACAATTCCCTACAATGCAATCTGAGCTCAATGGATTTCTGTCTGAAACTGTGAACACCAGCGGGATGGAGTACCCAACTCCGTCTCCTTTGGAAGATGAATTATGCAGCTCTGTGCAAGGGTTAAGGGCCCATGGTTGTTCTAGAGCAAGTGAGCAAGATGCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGAGGGAAAGTTCTCTTGTTGATGAAGAACTAGATGTGAATGACTCGAATATCTATCTTGAACTAGAGGATTTGATTACTAAGCCAACAGATTGGGTTGGATCTGCAAGTGGATTGGTGGGACAAGCCACTTGA 1236 0.4782 MGEEVARVKAELFDECEGDRHDDVLSESKDSGVTEEATAHVKEEADDAAVNGSSSLWMDQLPKPKPMEGLHEVGPPPFLKKTFEMVEDPDTDPIVSWSQTRDSFIVWDSHELSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHPGPGAFNLMKPGLEAEVEKLKKDQSILKVEILKLRQQQENSHVQLTNVQERIRSAEMKQYQMMFFLTRKARRPVFVEQLIQKIRRKRELDGNDVAKRPRLMGTPCHVTTLPKTMETTPNVDYRHQGHKQFPTMQSELNGFLSETVNTSGMEYPTPSPLEDELCSSVQGLRAHGCSRASEQDASSAYHVMSEKLMRESSLVDEELDVNDSNIYLELEDLITKPTDWVGSASGLVGQAT 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0642 411 MobiDBLite consensus disorder prediction 16 47 - -
Ssu6g0642 411 SUPERFAMILY "Winged helix" DNA-binding domain 74 167 IPR036390 -
Ssu6g0642 411 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 53 395 IPR027725 -
Ssu6g0642 411 MobiDBLite consensus disorder prediction 16 53 - -
Ssu6g0642 411 Pfam HSF-type DNA-binding 78 167 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g0642 411 Gene3D - 71 168 IPR036388 -
Ssu6g0642 411 ProSitePatterns HSF-type DNA-binding domain signature. 117 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g0642 411 PRINTS Heat shock factor (HSF) domain signature 78 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g0642 411 PRINTS Heat shock factor (HSF) domain signature 116 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g0642 411 PRINTS Heat shock factor (HSF) domain signature 129 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g0642 411 Coils Coil 191 211 - -
Ssu6g0642 411 SMART hsfneu3 74 167 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g0642 411 MobiDBLite consensus disorder prediction 269 292 - -
Ssu6g0642 411 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 53 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0642 Ssu-Chr6 9979869 9981927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0642 64 399 HSF AT2G26150 43.109 2.40e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu6g0642 HSF_DNA-bind 1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0642 K09419 - gmx:100818430 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0642 6 9979869 9981927 Ssu6g0642 6 9979869 9981927 ECH