Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0635 ATGTGCGGTGACGCCACGAACTGGGATGAAGACGCATACAGGGAAAGCGTATTGAAGGAGAGGGAGATTCAAACGCGAACCGTTTTCCGAACCGCTTGGGCCCCACCCTGCAGCCCTAAACTCGACACTCTCCTCGTTGCCTCTAGCGACGGTTCCGTCGCATCCTACTCCATCTCTTCCTCCATCTCCGCCTCTAAGCTCAAAAACCCCTTTGGTTTTGTCAGCGCCAATACACATAAGTTATTGGCTGAACCAAATTGCTTCCTTCAAGCGCATGATGGACCTGCGTATGATGTCAAATTTTACGGTGATGGCGAAGATGCTCTGTTGCTGAGCTGTGGTGATGATGGTCGGATTCGAGGATGGAGATGGAAGGAATTTTCAAGTTCAAATTATTCTGTTTCTTCACAAGGAAATGATATCAAGCCTGTACTTGATGTGGTGAATCCTCAACACAGAGGTCCTTGGGGTGCGCTTTCACCTATCCCCGAGAATAATGCTATTGCTGTTAATACTCAGGGGGGATCTGTTTTCGCTGCATCTGGTGATTCTAGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTATTCAAGGGGCATATGGACTATTTGCATTGTATAGTTGCACGCAACTCATCCAATCAGATCATAACAGGTTCAGAGGATGGGACTGCACGAATTTGGGATTGTAAAAATGGAAAGTGTACCCAAGTGATTAATCCAGCTAAAGATTTGAAGTTAAAGGGATCTGCTTCATGGGTTGGCTGTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGATGTAATATATCACTTTGGAACCTTCCTGCTTCAGAATGCGTATCAAAGATTCCAACTCATGCTTGTGTACAGGACATGTTATTTGACAATAATCAAATTTTGACAGTTGGAACAGATCCTCTACTCAATCGCTTTGACATGAATGGCACGATCCTTTCACAAATACAGTGTGCTCCTTCGACatctttttctatctctttacATCCTGCAGGGGTTATGGCAGTTGGAGGTTATGGATGTCTTGTTGATGTTATCTCACAATTTGGCAGCCACATGTGCACATTCCATTGCCAATGTGTCTAA 1125 0.4427 MCGDATNWDEDAYRESVLKEREIQTRTVFRTAWAPPCSPKLDTLLVASSDGSVASYSISSSISASKLKNPFGFVSANTHKLLAEPNCFLQAHDGPAYDVKFYGDGEDALLLSCGDDGRIRGWRWKEFSSSNYSVSSQGNDIKPVLDVVNPQHRGPWGALSPIPENNAIAVNTQGGSVFAASGDSSAYCWDVETGKVKMVFKGHMDYLHCIVARNSSNQIITGSEDGTARIWDCKNGKCTQVINPAKDLKLKGSASWVGCVALDASESWLACSSGCNISLWNLPASECVSKIPTHACVQDMLFDNNQILTVGTDPLLNRFDMNGTILSQIQCAPSTSFSISLHPAGVMAVGGYGCLVDVISQFGSHMCTFHCQCV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0635 374 SUPERFAMILY WD40 repeat-like 32 361 IPR036322 GO:0005515
Ssu6g0635 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Ssu6g0635 374 SMART WD40_4 82 123 IPR001680 GO:0005515
Ssu6g0635 374 SMART WD40_4 243 281 IPR001680 GO:0005515
Ssu6g0635 374 SMART WD40_4 193 232 IPR001680 GO:0005515
Ssu6g0635 374 SMART WD40_4 284 320 IPR001680 GO:0005515
Ssu6g0635 374 SMART WD40_4 155 190 IPR001680 GO:0005515
Ssu6g0635 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 232 - -
Ssu6g0635 374 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 9 371 IPR042626 -
Ssu6g0635 374 Pfam WD domain, G-beta repeat 250 281 IPR001680 GO:0005515
Ssu6g0635 374 Pfam WD domain, G-beta repeat 196 232 IPR001680 GO:0005515
Ssu6g0635 374 Gene3D - 8 140 IPR015943 GO:0005515
Ssu6g0635 374 Gene3D - 142 372 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0635 168 237 Eukaryotic Initiation Factors Gene Family AT2G46280 31.429 9.91e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0635 K13175 K03257 gmx:100806423 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0635 6 9879946 9886205 Ssu6g0635 6 9879946 9886205 ECH