Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0632 ATGTCCACACCGTCACCGAGATCGGTTGCCGTTGCCGTGAGCGGCGGCGCCAAGGGTAGCCGGCGAGCGGTACAGTGGGCGGTGGACAATCTCGTCCCTCAAGCCGATAGGTTCATCTTGGTTCACGTCATCCCTCGAATCACTTCAATTGCAACACCAACTGGAGAGTATATTCCCATTTCGGAAGCAGATGCCGATGTGTTTGCAGCTTCTGTGCAGGATGTGAAACAAAAGTCTGAACAAATCTTTGTTCCGTTCAAGAAACTCTGCGATTCAAACACCATGGAAACCGTACTACTAGAAGATGACAAAGCTGCAGAAGCACTTCTTAGCTTTATTTCAGAATCCGGGGTCCAAATATTAGTGCTGGGTTCTGACTCCTCAAATTTTATAACAAGGAAGCTAAAAGGACCTGGGATACCAACTACCATTCTAAGATGTTCTCCTGACAGTtgtgatgtatatgttgtagcTAGAGATAGAATTATATCGAAGTTGGCTGATTTTTCATCTTCACATTCTCATGAGACTAGCCCAAGGTACTTCATGTCTACTAAAGTAAATAAAGCAGACAATGATGCTGGCATTAGCAGAGAAACATCTGGAATTAGTTTATCCTCAACAGAACCTAAAATTCTGAAGAATTTCAGATTTTTATCAATATCAGAGCGTAGTTACATTGGTCTACAATCATTTAGTCATCATAGGGATTCATTTGAAAATTCTaccaaaaatgaagaagaaattcCAGAAAACTGTGGAGATGATATTGAAGCTATCAGCCTCCACTCATTTGATTCCATTGCTTCTGCACAACGTAAACAGTTAGTCATGCTAGAAGAAGTGGAACGGCTGCAGCTAGAGCTGCAAAATACTATCGCCATGTACAAACAGGTTTGTGAAGACCTGGTTCAAGCTCAAAACCAGGCTCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAATAGTAAATGCTTCCCTAAAAAGAGAGGAGACTTTGAGAAAGATTGCTGctgaagagaaaacaaagtattTAAAAGTCATGAAGGAACTTGAGGAGGCAAAAAGTAAGTTTGCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTAATGTCCTTAAAgaatcaatagaaaaacagagaATTGTCGATACATTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGAAATCAAGATAGCGACAAACTTCTTTGCTGAGGACTTGATAATTGGTGAAGGAGGATATGGAAAAGTTTACAAGTGTAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCATCAGGACGCAATCAACAAGAGAGAGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAACTACACCATCCTAATATGGTTTTGTTGCTTGGAGCCTGTCCTGAGAATCGTTGCCTTGTTTACGAATACATGGAAAATGGAAGTTTAGAAGACTATCTTctcaacaaaaatggaaaaccACCACTTCCTTGGTTTTTTCGATTTCGTATAGTTTTTGAAATGGCTTGTGGGCTTTCATTCTTGCATAATTCAAAGCCAGAGCCTATCGTTCATCGAGATATAAAACCTGGCAATATCTTGTTAGACAGAAATTATGTGAGCAAAATTGCAGATGTTGGGCTGGCTAAACTCCTAGCAGAAGTTGTGCCTGACAATATCACAGAGTACAGAGAATCAATGCTTGCCGGTACTCTGCATTACATGGACCCAGAGTATCAGAGAACTGGCACTGTCAGACCAAAATCAGATGTATATGCTTTTGGAGTTATAACTCTCCAATTGATAACCGGTCGCCATGCACGTGGACTCATTATGACTGTTGAAGATGCAATTAGAAATGGCTCCTTCCGTGATATTTTAGATACATCAGCTGGAGATTGGCCACTAGATGAGACAGTTGAATTGGCTCAAGTTGCCCTTAAATGCACTGCACTTAGATGCAGAGATAGGCCAGAACTTGATACTGTAGTTCTTCCACTGCTCGAAAGAATTTCTGATGCGGCAAATGCTAGTGCAAGGATGGGAAAAAATAGTGCAAGTGCGCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGTGGATGGTTTCACGTATGAGTACAGAGCAATCAAGGCATGGCTCAGCAAACACAATGTGTCACCGATGACAAAGCTTAAACTCCAGCATTCTGTATTGACTCCAAACCATACTTTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAGTGACCTTTTGA 2292 0.3962 MSTPSPRSVAVAVSGGAKGSRRAVQWAVDNLVPQADRFILVHVIPRITSIATPTGEYIPISEADADVFAASVQDVKQKSEQIFVPFKKLCDSNTMETVLLEDDKAAEALLSFISESGVQILVLGSDSSNFITRKLKGPGIPTTILRCSPDSCDVYVVARDRIISKLADFSSSHSHETSPRYFMSTKVNKADNDAGISRETSGISLSSTEPKILKNFRFLSISERSYIGLQSFSHHRDSFENSTKNEEEIPENCGDDIEAISLHSFDSIASAQRKQLVMLEEVERLQLELQNTIAMYKQVCEDLVQAQNQALLLSSESLEETKIVNASLKREETLRKIAAEEKTKYLKVMKELEEAKSKFAKESYERQMAELNVLKESIEKQRIVDTLLSNDRRYRKYTMDEIKIATNFFAEDLIIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKREEFLKEVEILSQLHHPNMVLLLGACPENRCLVYEYMENGSLEDYLLNKNGKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKIADVGLAKLLAEVVPDNITEYRESMLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIMTVEDAIRNGSFRDILDTSAGDWPLDETVELAQVALKCTALRCRDRPELDTVVLPLLERISDAANASARMGKNSASAPSQYYCPILQEIMDDPYIAVDGFTYEYRAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0632 763 ProSitePatterns Protein kinases ATP-binding region signature. 415 436 IPR017441 GO:0005524
Ssu6g0632 763 CDD STK_N 8 159 - -
Ssu6g0632 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Ssu6g0632 763 Pfam Protein tyrosine and serine/threonine kinase 414 668 IPR001245 GO:0004672|GO:0006468
Ssu6g0632 763 ProSiteProfiles Protein kinase domain profile. 409 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0632 763 Coils Coil 268 288 - -
Ssu6g0632 763 Coils Coil 361 381 - -
Ssu6g0632 763 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 158 - -
Ssu6g0632 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 693 761 IPR013083 -
Ssu6g0632 763 Coils Coil 335 358 - -
Ssu6g0632 763 CDD RING-Ubox_WDSUB1_like 696 736 - -
Ssu6g0632 763 Pfam U-box domain 693 758 IPR003613 GO:0004842|GO:0016567
Ssu6g0632 763 PANTHER OS02G0152300 PROTEIN 8 760 - -
Ssu6g0632 763 ProSiteProfiles U-box domain profile. 691 763 IPR003613 GO:0004842|GO:0016567
Ssu6g0632 763 Gene3D Transferase(Phosphotransferase) domain 1 482 692 - -
Ssu6g0632 763 SMART Ubox_2 695 757 IPR003613 GO:0004842|GO:0016567
Ssu6g0632 763 Gene3D HUPs 7 157 IPR014729 -
Ssu6g0632 763 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 8 760 - -
Ssu6g0632 763 SMART serkin_6 409 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0632 763 SUPERFAMILY Protein kinase-like (PK-like) 392 669 IPR011009 -
Ssu6g0632 763 Gene3D Phosphorylase Kinase; domain 1 388 481 - -
Ssu6g0632 763 SUPERFAMILY RING/U-box 689 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0632 Ssu-Chr6 9847084 9852398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0632 4 759 Plant U-box Gene Family AT5G57035 53.153 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu6g0632 PK_Tyr_Ser-Thr 5.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0632 - - gmx:100805896 1354.73