Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0627 ATGGAGGAAATATCTTCGAGTGTTGCAGTACCTTTTACACTTGGTGTTGGAAATTTGATTCAAAAGGAGTCTGCAGTGACGACTCACATGGAGATAACTGGGCTGAAGCTTATGGCAAATACAGCAGCAGCTGCTTTGATGTTAAATCCTGCAGTGGAGTGTTGTCAAACATATTCTGTTGGAAGTGAAAACCATGCAGATGTTAGTCTGCAGCACCAGATTACAGTATCTGCAGAGGTAAAGGAGAATCAAGTGGGAGCTGCCCTTGTCTCAGAAATGGTTATTGAATGTGAGAGTAATTGGGTCTTGAATGAAAGCCATAACCAGGCAAGAAAGGAAGATGAGTTAATGTTAGCAGTGGATTTTCAGTGTCTACATAATTCAATCTCTCAATCTGTGGCTAATGGAAAAAGTGACCCTTGTAAGGAGGAAGCTGCCTCTTTGAAGAGTAGTTATTCTGAAATAGATTCACCAATCATCATCAAGGTTGATGATGATGTTCATGGTAAGTCTGGGATAAATGAGCCGTGTCCATCAATGAAGCCAGTGGAGGACACAGTTTCTGTTGCAATGGATATTACTGGTGAGGATCAAAGTGGGTCAGATGAGTCTGATCCTAAACCATCTGCTGTGCTTCTTGATCAGTTGCCAAGGGAGAGTAAAACACAGAGAACAAGCAACCAGAATGCTTTGGAGTTGAATAGTGGCCCTCTCTGGGGTTGCTCGTCAATTTGTGGAATGAGACAGGAGATGGAAGATGCTATTTCTATTAAGCCTCAACTTTTTCATGTTCCTTCACAGATGCTAATGAATGACCATGTGAATGAGAACGAAAAACATTCACTGACCCACTTTTTTGGTGTCTACGATGGACATGGGGGCCTTCAGGTTGCTAATTACTGCCAGGAACGTCTTCATTCAGTGTTGATTGAGGAGATAGAGGCTGCACAATCGAGTTTGGCTGGAACAAATGGCAGAGATGATTGGCAGGACCGTTGGAAGAAAGCATTCATCAATTGTTTTCAGAAAGTAGATGATGAGGTTGGAGGAATTGGTGCAAGTAATAGTGGAAACAACAGTGGTGGATCTGAGTCTAATGTTGAACCTGTTGCCCCTGAGACTGCTGGCTCCACTGCAGTGGTTGCCATTTTAAGTCAAACCCACATAATAGTTGCAAATTGTGGGGATTCAAGAACTGTCTTATACCGTGGAAAAGAAGCCATGCCGTTGTCTTCTGACCACAAACCAAATAGAGAGGACGAGCGGGCAAGGATAGAAGCTGCAGGAGGAAGAGTCATACATTGGAAAGGATATCGAGTTCTTGGTGTCTTGGCAATGTCAAGGTCCATAGGTGATAGATACCTGAAACCATGGATAATTCCAGAACCTGAAGTGAATATTGTGCATCGGGAGAAAACCGATGAGTGTCTTATTCTAGCGAGTGATGGTTTATGGGATGTAATGACAAATGAAGAAGCCTGCGAGGTTGCGAGGAAGAGAATCCTTCTTTGGCACAAGAAGTATGGTGATAACGGCGCAACAGGACACGGTGAAGGAGCTGATCCTGCAGCTCAGTCTGCTGCTGAGTATCTAACTAGACTTGCCATCCACAGGGGAAGCCAAGATAACATCTCTGTAATTGTGATAGACCTAAAGgctcaaagaaaaattaagagaaaggcATAA 1686 0.4288 MEEISSSVAVPFTLGVGNLIQKESAVTTHMEITGLKLMANTAAAALMLNPAVECCQTYSVGSENHADVSLQHQITVSAEVKENQVGAALVSEMVIECESNWVLNESHNQARKEDELMLAVDFQCLHNSISQSVANGKSDPCKEEAASLKSSYSEIDSPIIIKVDDDVHGKSGINEPCPSMKPVEDTVSVAMDITGEDQSGSDESDPKPSAVLLDQLPRESKTQRTSNQNALELNSGPLWGCSSICGMRQEMEDAISIKPQLFHVPSQMLMNDHVNENEKHSLTHFFGVYDGHGGLQVANYCQERLHSVLIEEIEAAQSSLAGTNGRDDWQDRWKKAFINCFQKVDDEVGGIGASNSGNNSGGSESNVEPVAPETAGSTAVVAILSQTHIIVANCGDSRTVLYRGKEAMPLSSDHKPNREDERARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPEPEVNIVHREKTDECLILASDGLWDVMTNEEACEVARKRILLWHKKYGDNGATGHGEGADPAAQSAAEYLTRLAIHRGSQDNISVIVIDLKAQRKIKRKA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0627 561 MobiDBLite consensus disorder prediction 352 372 - -
Ssu6g0627 561 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 107 560 - -
Ssu6g0627 561 SUPERFAMILY PP2C-like 234 552 IPR036457 -
Ssu6g0627 561 SMART PP2C_4 228 549 IPR001932 -
Ssu6g0627 561 MobiDBLite consensus disorder prediction 195 227 - -
Ssu6g0627 561 Gene3D - 225 561 IPR036457 -
Ssu6g0627 561 Pfam Protein phosphatase 2C 264 544 IPR001932 -
Ssu6g0627 561 MobiDBLite consensus disorder prediction 351 372 - -
Ssu6g0627 561 ProSiteProfiles PPM-type phosphatase domain profile. 238 551 IPR001932 -
Ssu6g0627 561 CDD PP2Cc 240 551 IPR001932 -
Ssu6g0627 561 ProSitePatterns PPM-type phosphatase domain signature. 285 293 IPR000222 GO:0043169
Ssu6g0627 561 PANTHER ALPHABET, ISOFORM E-RELATED 107 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0627 Ssu-Chr6 9766042 9768553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0627 215 561 PP2C-type Phosphatase Gene Family AT1G17550 56.160 5.43e-137 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0627 K14497 - gmx:100789207 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0627 6 9766042 9768553 Ssu6g0627 6 9766042 9768553 ECH
Ssu6g0627 6 9766042 9768553 Ssu1g1556 1 36860146 36861839 PCT