Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0626 ATGAAGAAAGGAAACTTGGGCCTCGGTCTCAAACTCTCGGTTCCTGTATCTGATCAATCTAATTTTGCCAAGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTGAGAATGATGTCGAAGCTCCACCTCCAATCAAGCCTACAGACAACCAGTTAAGTTTGGCAGACATAGATGTAATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTCCAATTGGTGCAACACAAATGGACTAGTCAGTTTTTTGCATTGAAGGTAATTCAAATGAATATTGAGGAGTCTATGCGCAAGCAGATCGCACAAGAGCTGAAAATTAATCAACAAGCACAATGTCCTTATGTTGTTGTCTGCTACCAATCATTCTATGAAAATGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCTTGGCTGATCTTCTGAAGAAAGTTAAAACAATTCCGGAGCCTTTTCTTGCTGCCATCTGTAAACAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAAAGCCATATCATTCACAGAGACTTAAAACCttctaatttgttaataaatcaTATTGGTGAAGTAAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACTTTCATTGGCACATACAACTATATGTCTCCAGAGAGAATCAATGGAAGCCAGCGAGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTAATATTGCTCGAGTGTGCTTTGGGGCGGTTTCCATATACACCGCCTGATCAAAGTGAAAGATGGGAAAGTATTTTTGAGCTTATTGAAACCATTGTCGATAAACCTCCTCCTAGTCCTCCATCTGAACAATTTTCTACAGAATTTTGCACATTTATCTCAGCATGTCTACAGAAAGACCCAAAGGATCGACTGTCAGCTCAGGAATTAATGGGACATCCTTTTATCAGCATGTATGATGACTTGGAGGTGGATCTTTCAGCTTACTTCTCCAATGCTGGATCTCCTCTTGCAACCTTATAA 1071 0.3996 MKKGNLGLGLKLSVPVSDQSNFAKFLTESGTFKDGDLLVNRDGVRIVSENDVEAPPPIKPTDNQLSLADIDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRKQIAQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLKKVKTIPEPFLAAICKQVLKGLMYLHHESHIIHRDLKPSNLLINHIGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPPDQSERWESIFELIETIVDKPPPSPPSEQFSTEFCTFISACLQKDPKDRLSAQELMGHPFISMYDDLEVDLSAYFSNAGSPLATL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0626 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0626 356 CDD PKc_MAPKK_plant_like 85 336 - -
Ssu6g0626 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0626 356 PANTHER MAP KINASE KINASE 1 356 - -
Ssu6g0626 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0626 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Ssu6g0626 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 356 - -
Ssu6g0626 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Ssu6g0626 356 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Ssu6g0626 356 SUPERFAMILY Protein kinase-like (PK-like) 64 339 IPR011009 -
Ssu6g0626 356 Gene3D Transferase(Phosphotransferase) domain 1 150 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0626 Ssu-Chr6 9759686 9764853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0626 1 327 MAP Kinase Kinase Gene Family AT4G29810 66.667 4.68e-169 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Ssu6g0626 Pkinase 1.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0626 K20603 - gmx:100789734 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0626 6 9759686 9764853 Ssu6g0626 6 9759686 9764853 ECH
Ssu6g0626 6 9759686 9764853 Ssu1g1557 1 36865376 36869625 PCT