Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0624 ATGGTTTGGTTTCAATGCGAAGATTGCGGAGACAATCTCAAAAAACCCAAGTTGTCTAGCCACTTCCGAACTTGCTCCGCCCACAAATTGTCGTGCATTGACTGTGGGGAAATATTCGGCCGTGATACCGTTCAGGATCACACGCAGTGTATTACAGAAGCGGAAAAGTATGGTCCAAAAGGGCAAGGCAAAACTTTGAACGTTGCAACTGCCAAGCCTAACAAGGAGAGCAAGCAAAGGCCTGAAGTTGATATTAATGTGGGGTTATCTGAGCGGCCTCCTTGGTTCTGTAGTCTTTGCAATACAAAAGCTACAAGTAAGCAAACACTTCTTCTCCATGCTGATGGAAAGAAACACAGGGCAAAGGCCAGAGCATTCCATGCTTCAAAGCAACAACCAGTCCAGGCAGACAAATCTGCCGCTGATGCAAAGGTTGCTTTGGAGACTGCTCCTAATGGTGAGGTGAGAGATGACAAAAATGGAGAGCTGCCAAAATTGCAAGAGTCTTCTAAACAAAATAACTCAAAACCAGAGAATGAAATTTCTTCggcaaagaaaaagaggaaacttGAAGCATTGGAGGATGACCTTATTAAAAAAAGCAGGAATGACACTTCAGTTGACATGGGAAATGGAGAAGTAATTCAGGGTGAAGAAGCAACAGGAGAGAGCAATTTGAAGAACGGAGGGATGGTAGAACCTCAGTGTACCAGTgctgtcaaaaataaaataaaatggaagaagTTTATCAAATCAGCCTTGAAATCTCATCCTGATGGAATTTTGAAgatgaagaaaatgagaaaagttgTCGTCAAAGCACTGCAGGAATCTGGCATTGTAGTGGATGAAGCTGAATTGACTGAGGCACTTGAGCAGAAGATCAATTCCAGCTCCAGATTTGTAGTTGAGAACAAGTATGTGCGATTGCTGGCCAAAGATTGA 945 0.4042 MVWFQCEDCGDNLKKPKLSSHFRTCSAHKLSCIDCGEIFGRDTVQDHTQCITEAEKYGPKGQGKTLNVATAKPNKESKQRPEVDINVGLSERPPWFCSLCNTKATSKQTLLLHADGKKHRAKARAFHASKQQPVQADKSAADAKVALETAPNGEVRDDKNGELPKLQESSKQNNSKPENEISSAKKKRKLEALEDDLIKKSRNDTSVDMGNGEVIQGEEATGESNLKNGGMVEPQCTSAVKNKIKWKKFIKSALKSHPDGILKMKKMRKVVVKALQESGIVVDEAELTEALEQKINSSSRFVVENKYVRLLAKD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0624 314 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Ssu6g0624 314 Pfam Zinc-finger of C2H2 type 95 119 - -
Ssu6g0624 314 Gene3D Classic Zinc Finger 72 125 - -
Ssu6g0624 314 Gene3D - 1 50 - -
Ssu6g0624 314 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Ssu6g0624 314 Coils Coil 183 203 - -
Ssu6g0624 314 MobiDBLite consensus disorder prediction 121 188 - -
Ssu6g0624 314 MobiDBLite consensus disorder prediction 151 165 - -
Ssu6g0624 314 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 311 IPR039999 GO:0003677
Ssu6g0624 314 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Ssu6g0624 314 SUPERFAMILY beta-beta-alpha zinc fingers 85 127 IPR036236 -
Ssu6g0624 314 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Ssu6g0624 314 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Ssu6g0624 314 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0624 77 222 C2H2 Transcription Factor Family AT2G19380 43.151 1.09e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0624 K15263 - gmx:100790272 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0624 6 9737305 9740030 Ssu6g0624 6 9737305 9740030 ECH