Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0615 ATGGACGGTGGAGCGCATTACAACCCTCGTACCGTCGAAGAGGTTTTCAGGGACTTAAAGGGCCGTAGAGCCGGCATGATCAAGGCTCTCACCACtgATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGTGGCTTTCTACTTTGGGGCACGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTGTTCACCATGATTAATGATTTACCAACAATATTTGAGGTTGTGACTGGAAGTGCAAAAAAACAGACTAAGGAAAACTCATCCATTTCAAACCATACCAGCAACAAATCAAAATCCGGTTCAAAAGGGCGAGGATCTGAATCAGGGAAGTATTCAAAGCAGACAAAGGacgaggaggaggaagaggtaCTGGATGAAGATGAGGAGGAGCATGGGCAGACATTGTGTGGTGCATGTGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCCAGGGCTGAGCACATCAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAGCACGGCCCTGA 573 0.4485 MDGGAHYNPRTVEEVFRDLKGRRAGMIKALTTDVEEFFQQCDPVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAKKQTKENSSISNHTSNKSKSGSKGRGSESGKYSKQTKDEEEEEVLDEDEEEHGQTLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0615 190 CDD PHD_AL_plant 136 186 IPR044104 -
Ssu6g0615 190 ProSitePatterns Zinc finger PHD-type signature. 137 183 IPR019786 -
Ssu6g0615 190 ProSiteProfiles Zinc finger PHD-type profile. 134 186 IPR019787 -
Ssu6g0615 190 PANTHER CPG BINDING PROTEIN 3 43 IPR045104 GO:0006355|GO:0042393
Ssu6g0615 190 Pfam Alfin 11 43 IPR021998 GO:0006355|GO:0042393
Ssu6g0615 190 Pfam Alfin 44 78 IPR021998 GO:0006355|GO:0042393
Ssu6g0615 190 MobiDBLite consensus disorder prediction 83 109 - -
Ssu6g0615 190 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 44 190 - -
Ssu6g0615 190 SUPERFAMILY FYVE/PHD zinc finger 126 187 IPR011011 -
Ssu6g0615 190 PANTHER CPG BINDING PROTEIN 44 190 IPR045104 GO:0006355|GO:0042393
Ssu6g0615 190 Pfam PHD-finger 137 186 IPR019787 -
Ssu6g0615 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 185 IPR013083 -
Ssu6g0615 190 SMART PHD_3 136 184 IPR001965 -
Ssu6g0615 190 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 43 - -
Ssu6g0615 190 MobiDBLite consensus disorder prediction 83 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0615 Ssu-Chr6 9668358 9671527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0615 1 189 Alfin-like Transcription Factor Family AT3G42790 49.004 7.65e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ssu6g0615 PHD 1.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0615 - - gmx:100500110 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0615 6 9668358 9671527 Ssu6g0615 6 9668358 9671527 ECH