Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0613 ATGAAGCCGTTCTTCTTGTCGAATCATCCTGATACTATGTATAATTGTTCACAAGTTGATTGTAGTCATTCAATGGCTCATACTCCTTATCCTTGTGGTGATCCTTATTTTGGTAGTTCATTAATTGCATATGGACCACAGGCTATTaatcaACCCCAAATGGTACCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGAGCTTGCAGAAGACGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAAGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCATGCATTGAAAAGGGTTAGGGGATCTGGGGGACGCTTTCTTAGCGCCAAACAGCTGCAGCAGTCTAATGCAGAACTTGTCACTGATGCCCACTCAGGCCTGGACCCTGTCAACGTTTATCAAAAGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAGGAGCTGGTGAAAATGCATCTATCACGGCCATCTCTGGCTTAACAAGTATGTCCAGTAACTGTGTCAATTTCAGGCAGCCTGAGCATAACTTCTTGGGGAACTCCCAAAACATGGGTGGCTCATCACAATGCAGTGGGGCACTCACCTTTGGTGGTGGAGCTCGACAATGTGCTTCAGTTGGCCGAAATGTTATCTTTTGGAAGACTTTGCATAAGCACTCAGACCTTTGCTAG 747 0.4552 MKPFFLSNHPDTMYNCSQVDCSHSMAHTPYPCGDPYFGSSLIAYGPQAINQPQMVPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSAKQLQQSNAELVTDAHSGLDPVNVYQKKDASEVESHPSGAGENASITAISGLTSMSSNCVNFRQPEHNFLGNSQNMGGSSQCSGALTFGGGARQCASVGRNVIFWKTLHKHSDLC 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0613 248 Gene3D - 74 136 - -
Ssu6g0613 248 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 228 IPR001289 GO:0003700|GO:0006355
Ssu6g0613 248 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Ssu6g0613 248 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Ssu6g0613 248 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Ssu6g0613 248 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Ssu6g0613 248 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 228 - -
Ssu6g0613 248 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Ssu6g0613 248 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0613 Ssu-Chr6 9648729 9650522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0613 16 140 CCAAT-HAP2 Transcription Factor Family AT1G17590 57.480 6.50e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ssu6g0613 CBFB_NFYA 5.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0613 K08064 - gmx:100792905 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0613 6 9648729 9650522 Ssu6g0613 6 9648729 9650522 ECH