LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g0610	ATGCTTACGTGCATAGCTCGTCCCAAAAAACCTGATGAGTCGGATCCGAACAACGCGACAAGCGCCGCTAAATCCCAAGCCATCAAATCCCTCACTTCTCAGATAAGGGATATGGCGTTGAAGGCTTCGGGGGCGTACAAGCATTGCGCTCCGTGCACGGGGCCGGCGATGCAGGGGCGAGTGAGGAGCAACGCTGAGTCGGACGCGGATTCCGACCGGTTCCGGTGGTCGTACCGGAGGACGGGGAGTTCGAGTTCGACGACGACGAGGACGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATTTCGAGCGGGGAGGGGACGCCGAACTCCGCTAGCGGGCGGCGGGCGGAGCCGGTGGTGCTGTTCGTGGAGGAGAACGAGCCCAAAGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATCACGTTCGTGTCGTTGCCACGTGGCGGGAACGATCTCAAGCGCATACGGTTCAGTCGGGAGATGTTCAATAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAACTACGACAAGGTCATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTCCCTCTTCCAACGCCACCAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGCAGAAGAAAGCCCTGTAACACCTCCACTGACCAGGGAACGGTTACCTCGTAATATGTACCGTCCAACAGGAATGGGAATGGGATACTCATCCTCAGATTCCTTTGATCATCAGTCAATGCAATCCCGGCATTTTTATGACTCGAATGGTATGAACTCAACCCCAAAAGTGTCCACCATTAGTGCGGCCAAGACGGAGATATCATCCATGGATGCTTCTATCAGAAGTAGCTCATCGAGAGAGGCTGATCGCTCGGGTGATTTATCATTCAGCAATGCTAGTGATTTGGAGACTGAATGGGTTGAACAGGATGAACCTGGAGTTTACATTACGATCAGAGCATTGCCAGGTGGGGCAAGGGAGCTCAAACGAGTCAGGTTCAGCCGAGAAAGATTTGGGGAGATGCATGCCAGATTATGGTGGGAGGAGAACCGTGCCAGAATACATGAACAATACTTGTGA	1098	0.5364	MLTCIARPKKPDESDPNNATSAAKSQAIKSLTSQIRDMALKASGAYKHCAPCTGPAMQGRVRSNAESDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPPRSEDESSKLESAEESPVTPPLTRERLPRNMYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGMNSTPKVSTISAAKTEISSMDASIRSSSSREADRSGDLSFSNASDLETEWVEQDEPGVYITIRALPGGARELKRVRFSRERFGEMHARLWWEENRARIHEQYL	365

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu6g0610	365	Pfam	Transcription factor BRX N-terminal domain	20	52	IPR027988	-
Ssu6g0610	365	Pfam	Transcription factor regulating root and shoot growth via Pin3	131	185	IPR013591	-
Ssu6g0610	365	Pfam	Transcription factor regulating root and shoot growth via Pin3	309	364	IPR013591	-
Ssu6g0610	365	PANTHER	PROTEIN BREVIS RADIX-LIKE 4	1	365	-	-
Ssu6g0610	365	MobiDBLite	consensus disorder prediction	194	229	-	-
Ssu6g0610	365	ProSiteProfiles	BRX domain profile.	131	186	IPR013591	-
Ssu6g0610	365	MobiDBLite	consensus disorder prediction	1	27	-	-
Ssu6g0610	365	PANTHER	PROTEIN BREVIS RADIX-LIKE 1	1	365	IPR044532	-
Ssu6g0610	365	ProSiteProfiles	BRX domain profile.	310	365	IPR013591	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g0610	Ssu-Chr6	9611599	9616755	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g0610	1	365	Major Intrinsic Protein MIP	AT1G31880	45.855	8.08e-94	283

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g0610	-		-	gmx:100794109	683.33

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu6g0610	6	9611599	9616755	Ssu6g0610	6	9611599	9616755	ECH
	Ssu6g0610	6	9611599	9616755	Ssu1g1566	1	37079081	37087194	PCT

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