Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0610 ATGCTTACGTGCATAGCTCGTCCCAAAAAACCTGATGAGTCGGATCCGAACAACGCGACAAGCGCCGCTAAATCCCAAGCCATCAAATCCCTCACTTCTCAGATAAGGGATATGGCGTTGAAGGCTTCGGGGGCGTACAAGCATTGCGCTCCGTGCACGGGGCCGGCGATGCAGGGGCGAGTGAGGAGCAACGCTGAGTCGGACGCGGATTCCGACCGGTTCCGGTGGTCGTACCGGAGGACGGGGAGTTCGAGTTCGACGACGACGAGGACGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATTTCGAGCGGGGAGGGGACGCCGAACTCCGCTAGCGGGCGGCGGGCGGAGCCGGTGGTGCTGTTCGTGGAGGAGAACGAGCCCAAAGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATCACGTTCGTGTCGTTGCCACGTGGCGGGAACGATCTCAAGCGCATACGGTTCAGTCGGGAGATGTTCAATAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAACTACGACAAGGTCATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTCCCTCTTCCAACGCCACCAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGCAGAAGAAAGCCCTGTAACACCTCCACTGACCAGGGAACGGTTACCTCGTAATATGTACCGTCCAACAGGAATGGGAATGGGATACTCATCCTCAGATTCCTTTGATCATCAGTCAATGCAATCCCGGCATTTTTATGACTCGAATGGTATGAACTCAACCCCAAAAGTGTCCACCATTAGTGCGGCCAAGACGGAGATATCATCCATGGATGCTTCTATCAGAAGTAGCTCATCGAGAGAGGCTGATCGCTCGGGTGATTTATCATTCAGCAATGCTAGTGATTTGGAGACTGAATGGGTTGAACAGGATGAACCTGGAGTTTACATTACGATCAGAGCATTGCCAGGTGGGGCAAGGGAGCTCAAACGAGTCAGGTTCAGCCGAGAAAGATTTGGGGAGATGCATGCCAGATTATGGTGGGAGGAGAACCGTGCCAGAATACATGAACAATACTTGTGA 1098 0.5364 MLTCIARPKKPDESDPNNATSAAKSQAIKSLTSQIRDMALKASGAYKHCAPCTGPAMQGRVRSNAESDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPPRSEDESSKLESAEESPVTPPLTRERLPRNMYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGMNSTPKVSTISAAKTEISSMDASIRSSSSREADRSGDLSFSNASDLETEWVEQDEPGVYITIRALPGGARELKRVRFSRERFGEMHARLWWEENRARIHEQYL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0610 365 Pfam Transcription factor BRX N-terminal domain 20 52 IPR027988 -
Ssu6g0610 365 Pfam Transcription factor regulating root and shoot growth via Pin3 131 185 IPR013591 -
Ssu6g0610 365 Pfam Transcription factor regulating root and shoot growth via Pin3 309 364 IPR013591 -
Ssu6g0610 365 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 365 - -
Ssu6g0610 365 MobiDBLite consensus disorder prediction 194 229 - -
Ssu6g0610 365 ProSiteProfiles BRX domain profile. 131 186 IPR013591 -
Ssu6g0610 365 MobiDBLite consensus disorder prediction 1 27 - -
Ssu6g0610 365 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 365 IPR044532 -
Ssu6g0610 365 ProSiteProfiles BRX domain profile. 310 365 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0610 Ssu-Chr6 9611599 9616755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0610 1 365 Major Intrinsic Protein MIP AT1G31880 45.855 8.08e-94 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0610 - - gmx:100794109 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0610 6 9611599 9616755 Ssu6g0610 6 9611599 9616755 ECH
Ssu6g0610 6 9611599 9616755 Ssu1g1566 1 37079081 37087194 PCT