Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0607 ATGGGTGATTTTCAAGGCCCCATCATAGTGTCACCCCCTCCTTCTCCCTCTTCGTCGGATAAGTCCAGCACAGCCATGTTATATTATGGCCTAGTAGTGGTGGGGATTGCAGCCACGGCATTAGCCCTATACAACTTCATCACCATCAGGCGAAGCAGGAGGCGCCATATGCAATCACTGCCCGAAGGGGCAAATGGGTTGGTCGAAGTGGTCACGGAAAGTAGCATTGAGAACTGCCAAAGGAACTTGAACTTGCTCTCAAGCTTCAAGTACAAGAAGAAAGAAGCAGGAAAAGAAGGAGTTGGGGATGATTACGAATGCCCAGTTTGCTTATCTGGTTTTGAAGAAGGGGAAGACGTGAGGAAGCTACCCCTGTGCAAGCACTCCTTCCACGCTCCATGCATAGACATGTGGCTTTACTCACATTTCGATTGCCCAATTTGTCGAACACCTGTTGGTCCATTCTGTCACCGTTTCCCGCAGGAGAATTCTCGTCCGGGATTGCTGGAATCCGGCGGTGTCTCGGTTTGA 531 0.5028 MGDFQGPIIVSPPPSPSSSDKSSTAMLYYGLVVVGIAATALALYNFITIRRSRRRHMQSLPEGANGLVEVVTESSIENCQRNLNLLSSFKYKKKEAGKEGVGDDYECPVCLSGFEEGEDVRKLPLCKHSFHAPCIDMWLYSHFDCPICRTPVGPFCHRFPQENSRPGLLESGGVSV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0607 176 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 157 IPR044675 -
Ssu6g0607 176 SMART ring_2 107 148 IPR001841 -
Ssu6g0607 176 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Ssu6g0607 176 SUPERFAMILY RING/U-box 100 156 - -
Ssu6g0607 176 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 157 - -
Ssu6g0607 176 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g0607 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 154 IPR013083 -
Ssu6g0607 176 Pfam Ring finger domain 106 149 IPR001841 -
Ssu6g0607 176 CDD RING-H2_EL5_like 106 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0607 Ssu-Chr6 9590258 9590788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0607 31 152 C3H Transcription Factor Family AT5G17600 36.923 1.29e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0607 - - gmx:102668213 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0607 6 9590258 9590788 Ssu6g0607 6 9590258 9590788 ECH
Ssu6g0607 6 9590258 9590788 Ssu1g1571 1 37191218 37191751 PCT