Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0605 ATGTCGGTGAATCTGACGCCGAATGCGATCCCGGCGATAGTGTCCGGCGACATGAACTCGAAGCCGCTGGTGCAGGTTCTGGATATCAAGTTGATTCGGAGTAGTAAGCGGCAAGAGAGGTACCGAATTTTGCTTTCCGACGCCGTTTTCTCTCAGCACGCCATGGTCGCGACTCAGCTCAACGACCGAGTCCGAACCGGACGAGTCAAGAAAGGTTCCGTCGTTCAGCTGATCGACTACATTTGCAGTCCTATTCAGAACCGCAAGATTGTTGTGGTGCTCAACATGGAAACTATAATACCAGATTGCGAGATCATTGGAAATCCAAAGCCATTTTTGGAATCTGACTTCCCAACTCAGGGAGCATTACCTAATAATAATATGGAGAACTCATCCACGGGTAATAATTTTCATCCGCCAACTCAAAATACTAGTTGTAATGTGCAGAATTTCCGGCCAACTCTTCAACCTCCATACCAACTACCACCAGTTTACAAAAGCCATGTATCTTCATCCGATGAATAA 525 0.4667 MSVNLTPNAIPAIVSGDMNSKPLVQVLDIKLIRSSKRQERYRILLSDAVFSQHAMVATQLNDRVRTGRVKKGSVVQLIDYICSPIQNRKIVVVLNMETIIPDCEIIGNPKPFLESDFPTQGALPNNNMENSSTGNNFHPPTQNTSCNVQNFRPTLQPPYQLPPVYKSHVSSSDE 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0605 174 MobiDBLite consensus disorder prediction 119 155 - -
Ssu6g0605 174 Gene3D - 3 113 IPR012340 -
Ssu6g0605 174 PANTHER REPLICATION FACTOR A 1, RFA1 2 108 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu6g0605 174 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ssu6g0605 174 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Ssu6g0605 174 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 108 - -
Ssu6g0605 174 CDD RPA1N 9 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ssu6g0605 174 MobiDBLite consensus disorder prediction 118 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0605 Ssu-Chr6 9583528 9586166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0605 26 168 Core DNA Replication Machinery Family AT2G06510 48.503 3.81e-40 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0605 K07466 - jre:109008783 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0605 6 9583528 9586166 Ssu6g0605 6 9583528 9586166 ECH