Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0597 ATGATGAATGGAAGGAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTACAAATACATGGCTTCTGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGGAACCACTTGGACTCTCCTCTCTCCTCAAGGCTTTTGCCTCACCAGCCTCAACACTTTGGGTGGAACTATTTGCCAATGGGATTGGGGAGGAAAATAGACCCAGAGCCAGGGAGGTGTAGAAGAACAGATGGGAAGAAGTGGAGGTGCTCAAAGGAGGCGTACCCAGATTCAAAGTACTGCGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCGACAGCATTAGCAGCAACAAACGCAGATGCCTCAACCCCCACAATCTTATCAATCACCAAAAACAGTCCTGCACTCTCCCCAACCACTCATTCTCTCTCCGTGTCCTCTCATGACACCTACcgtcatcatcaccaccaccctCAACATTCCTCCCACTCCTTCCTCTATCATCCCTCAAGGCCTTCCAACGGTGTTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTCCTCGACACTGCTTCTTGCTCTCAGAATAACAACACTGACTGCAGGAACAGGTTTGTGTATGGGCTGAAAGAGGAGGTGGATGAGCATGCCTTCTTCACCGAACCTTCTGGAACTATGCGAAGCTTCTCTGCTTCCTCAATGGAAGATTCTTGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCGAAACAGAGGAGTTGCTCTGGTTTATCCAATGACAACAACGAGTGCTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAACAGCCGCAGCAAGATCAGGGTTGCTACATGTCAGGAACTGATGTAAAGTGTGAAACGTTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCTCCCAAAAGCAGAGGATCGTGGCTCGATTTGGATGACAAATCGTCCACCACCCAGCTCTCAATTTCCATCCCCACGTCTTCTCATGATTTTGCAACTTTCAGTTCAACAACTCAACGGGGTAATGAACTATGTGACTCTTTGTGA 1152 0.4722 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRNHLDSPLSSRLLPHQPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTALAATNADASTPTILSITKNSPALSPTTHSLSVSSHDTYRHHHHHPQHSSHSFLYHPSRPSNGVALSFQDNSAPLFLDTASCSQNNNTDCRNRFVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNECSYLQLQSLSGNNSKQPQQDQGCYMSGTDVKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFATFSSTTQRGNELCDSL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0597 383 Pfam WRC 78 120 IPR014977 -
Ssu6g0597 383 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu6g0597 383 PANTHER - 4 353 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ssu6g0597 383 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Ssu6g0597 383 MobiDBLite consensus disorder prediction 146 161 - -
Ssu6g0597 383 PANTHER GROWTH-REGULATING FACTOR 5 4 353 - -
Ssu6g0597 383 MobiDBLite consensus disorder prediction 146 181 - -
Ssu6g0597 383 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu6g0597 383 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0597 Ssu-Chr6 9321487 9323264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0597 7 120 GRF Transcription Factor Family AT3G13960 71.053 1.71e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ssu6g0597 WRC 8.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0597 - - gsj:114382009 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0597 6 9321487 9323264 Ssu6g0597 6 9321487 9323264 ECH
Ssu6g0597 6 9321487 9323264 Ssu1g1585 1 37652607 37653862 PCT