Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0585 ATGAAAATCGCATGGGGATCCATCTTCTCTAGTTGTTTTAAGGATGAGTCTGTGTCACCTTCCCCCAAGCCCACCAAAGTGGTGGCTACGAAGGGTGGCGGTTCTTCTTCCAACAGGGTCTCCATAACGGACTTGAGTTTTCCTGGCTCAACGCTTTCAGAGGATCTGTCCATTTCTCTAGTGGGGTCTAATCTGCATGTTTTTTCACTTGCTGAGCTCAAGATCATCACTCAGAGTTTCTCTTCCAGTAACTTTCTCGGAGAAGGAGGTTTCGGACCTGTGCATAAGGGCTTCATTGATGACAAGGTTAGGCCTGGCCTCCAGGCTCAGCCGGTGGCCGTCAAGCTCTTGGACTTGGATGGTACTCAGGGCCATAAAGAGTGGTTGACTGAAGTTGTATTTCTGGGTCAACTAAGGCATTCACACCTGGTGAAGTTGATTGGATACTGCTGTGAAGAAGAGCACAGGCTTCTGGTGTATGAATATTTACCACGAGGCAGCTTAGAGAATCAACTATTTAGAAGATTTACGGCATCGTTACCATGGTCAACAAGAATGAAAATTGCAGCTGGAGCTGCGAAGGGTCTAACCTTTCTACATGAAGCAAAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATCTTGTTAGACTCAGATTATAATGCAAAGCTTTCTGATTTTGGCTTGGCAAAAGATGGTCCCGAAGGGGATGACACACACGTTTCAACTAGAGTCATGGGCACCCAAGGGTATGCAGCCCCGGAGTACATTATGACAGgaCACTTGACAGCAATGAGTGATGTGTATAGTTTTGGAGTTGTCCTGTTAGAGCTTCTAACAGGTAGAAGGTCAGTGGACAAAGGGCGCCCACCTAGAGAGCAAAACCTGGTGGAATGGGCCAGGCCTGTTTTGAATGATTCCCGGAAACTTAGTCGAATAATGGATCCAAGGCTTGAGGGTCAGTATTCTGAGGTAGGGGCAAGAAAAGCAGCTGCATTGGCTTATCAATGCCTCAGCCACAGGCCAAGGAGTCGACCCTTAATGAGCACAGTGGTTAAGGTTCTTGAGCCACTCCAGGACTTTGATGACATTCCAATTGGACCCTTTGTTTACACGGTTCCAACCGATAATGAAGTGGCAAAAGAGAGTGAAACACCAAAGGAGAGGAAGAGGGAAAATGGTCATCATCACAGGAGTCATCATCATAACAATGGTCATAAGCATCACGATCATGATGAGGTCAATAAAGATGCAAATGAATGTGAAGCACCTAGTGAGTGGAGGAGGGAAAATGGTCACCATCACCGAAGTCATCATCGCCACAATGGCCATAGGCATCATCCACTTAAATCTCCCAAGTCACCAATGTCATCAGTGTCACAGAATGATGAACACCAACATGGTAGAAGAAGCGGGTCAAACTCACCTGACACATCCATTGCATCAGAAGCGCAAGAAAGCATGGGTTAG 1476 0.4627 MKIAWGSIFSSCFKDESVSPSPKPTKVVATKGGGSSSNRVSITDLSFPGSTLSEDLSISLVGSNLHVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKVRPGLQAQPVAVKLLDLDGTQGHKEWLTEVVFLGQLRHSHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRFTASLPWSTRMKIAAGAAKGLTFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKGRPPREQNLVEWARPVLNDSRKLSRIMDPRLEGQYSEVGARKAAALAYQCLSHRPRSRPLMSTVVKVLEPLQDFDDIPIGPFVYTVPTDNEVAKESETPKERKRENGHHHRSHHHNNGHKHHDHDEVNKDANECEAPSEWRRENGHHHRSHHRHNGHRHHPLKSPKSPMSSVSQNDEHQHGRRSGSNSPDTSIASEAQESMG 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0585 491 MobiDBLite consensus disorder prediction 14 37 - -
Ssu6g0585 491 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Ssu6g0585 491 CDD STKc_IRAK 86 360 - -
Ssu6g0585 491 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 26 410 - -
Ssu6g0585 491 MobiDBLite consensus disorder prediction 474 491 - -
Ssu6g0585 491 MobiDBLite consensus disorder prediction 377 491 - -
Ssu6g0585 491 SUPERFAMILY Protein kinase-like (PK-like) 55 358 IPR011009 -
Ssu6g0585 491 Pfam Protein tyrosine and serine/threonine kinase 84 356 IPR001245 GO:0004672|GO:0006468
Ssu6g0585 491 PANTHER OS01G0588500 PROTEIN-RELATED 26 410 - -
Ssu6g0585 491 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0585 491 MobiDBLite consensus disorder prediction 434 453 - -
Ssu6g0585 491 Gene3D Phosphorylase Kinase; domain 1 49 162 - -
Ssu6g0585 491 MobiDBLite consensus disorder prediction 408 433 - -
Ssu6g0585 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0585 Ssu-Chr6 9138974 9141216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0585 66 405 Glycoside Hydrolase AT3G07070 50.000 7.82e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu6g0585 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0585 - - gmx:100305397 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0585 6 9138974 9141216 Ssu4g3129 4 79347237 79349045 ECH
Ssu6g0585 6 9138974 9141216 Ssu5g0507 5 10880009 10882217 ECH
Ssu6g0585 6 9138974 9141216 Ssu6g0585 6 9138974 9141216 ECH
Ssu6g0585 6 9138974 9141216 Ssu1g1599 1 37963611 37966689 PCT