Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0573 ATGGCCGCTGTTCgcctcctcttcctcctcctcctcctcctccctcctctctccctctccaTCCCCGAAAACGAAGCCCTCCTCAACCTCAAAAACTCCTTCTCCAACGCCCAGCGCCTCTCCTCCTGGCTCCCCAACCAGAACCCCTGTACCTCCAAGTGGCGCGGCGTCATGTGTTCCAAGAACGCCGTCACCGGCCTCCACCTCGTCCACCTCGGCCTCTCCGGCGCCATCGACGTCGACTCCCTCGCCAACATCCCCACCCTCCGATCCATCAGCTTCGTCAACAACAACTTCTCCGGTCCAATCCCTCCCTTCCACAAACTCGGCGCCCTCAAGGCCCTCTACCTAACCCGCAACCACTTCTCCGGCCCCATCCCCTCCGATTTCTTCTCCCAGTTAGCCTCCCTTAAAAAAATATCCATCTCTGACAACAAGTTCTCCGGTCCAATCCCCGCCTCCTTAACCACCCTCCGCTTCCTCACCCAGTTGTACCTCGAGAACAACGAGTTCTCCGGCCCCGTCCCCGAATTCAAACAAGACATCAAATCACTGAACCTGTCTTTCAACAAGCTGCAAGGCGAAATACCCAGCAGCATGTCGCGCTTCGGCCCCCAATCGTTCTCCAACAACGAAGGACTCTGCGGGAAGCCGTTGGACAAAGCGTGCGAGGCGAAAAACGAAGAAGCACCACAAGGGAGTAATAATGGTTTGGTGACCAAGGTGGTTATACTCCTCGCTATCGCCGCGGCCTTGGCGGTGGCTTTTCTGGTGGTGCGGTCGAAGCGGCGCcgcgacgacgacgacgacgacttCAGCGTGGTGAGCAGGGAGCACGTGGAGGAGGTGGTGCAAGTGCACGTGCCGAGCTCGAACCACAGTAGGGCCGCGGAGGGAGGGAGCAGGAAGGAGTCGAAGAAAGGGTCGTCGCGGAGCGGCATGGGTGACCTTGTGATGGTGAATGACGACAAGGGCGTGTTTGGTTTGCCCGATTTGATGAAGGCCGCGGCCGAGGTTTTGGGGAACGGTGGGTTGGGTTCGGCCTACAAAGCCGCCATGGCCAATGGGTTGTCCGTCGTGGTCAAGCGGATGCGCGAGATGAATAAAGTGAGCAGAGACATCTTTGACGCGGAGATGAGACGCTTCGGAAGACTCAAAAACCGTAACATTTTGACGCCCTTGGCTTACCATTACCGCAGGGAGGAAAAGTTGTTTATCACACAGTACATGCCCAAAGGAAGCTTGTTATATGTCTTGCACGGTGACAGAGGATCGAGTCATGCTGACCTGAGCTGGCCTATCCGTTTGAATATTGTGAAGGGAATTGCACGAGGGTTGGGGTTTCTTTATTCTGAATTTTCTATCGAAGACCTGCCACATGGGAACCTCAAATCCAGCAATGTTATATTAGCTGATAATTACGAGCCTCTCCTAAGCGACTTTGCCTTTCATCCACTCATCAACCCCAACTACGCCGTTCAGACAATGTTTGCCTACAAAACTCCTGATTACGTGATGTACCAGCGAGTTTCACAGAAGACAGACGTTTACTGCCTTGGGATTATCATTCTCGAAATCATCACTGGGAAATTCCCTTCCCAGTATCACAGCAATGGCAAGGGTGGGACCGACGTAGTGCAATGGGTGTTCACTGCAATTTCCGAGAGAAGAGAGGCGGAATTGATTGATCCAGATTTAAAAAGCAACCACTCGAACTCCCTCAATCAGATGCTACAACTTCTCCAAGTTGGGGCTGCTTGCACGGAGAGCAACCCCGACCAACGACTTAAAATGAAGGAAGCGATTAGGAGGGTAGAGGAGGTTCAGGTTTAA 1833 0.5161 MAAVRLLFLLLLLLPPLSLSIPENEALLNLKNSFSNAQRLSSWLPNQNPCTSKWRGVMCSKNAVTGLHLVHLGLSGAIDVDSLANIPTLRSISFVNNNFSGPIPPFHKLGALKALYLTRNHFSGPIPSDFFSQLASLKKISISDNKFSGPIPASLTTLRFLTQLYLENNEFSGPVPEFKQDIKSLNLSFNKLQGEIPSSMSRFGPQSFSNNEGLCGKPLDKACEAKNEEAPQGSNNGLVTKVVILLAIAAALAVAFLVVRSKRRRDDDDDDFSVVSREHVEEVVQVHVPSSNHSRAAEGGSRKESKKGSSRSGMGDLVMVNDDKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMREMNKVSRDIFDAEMRRFGRLKNRNILTPLAYHYRREEKLFITQYMPKGSLLYVLHGDRGSSHADLSWPIRLNIVKGIARGLGFLYSEFSIEDLPHGNLKSSNVILADNYEPLLSDFAFHPLINPNYAVQTMFAYKTPDYVMYQRVSQKTDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVFTAISERREAELIDPDLKSNHSNSLNQMLQLLQVGAACTESNPDQRLKMKEAIRRVEEVQV 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0573 610 Gene3D Transferase(Phosphotransferase) domain 1 411 610 - -
Ssu6g0573 610 Pfam Leucine rich repeat 112 170 IPR001611 GO:0005515
Ssu6g0573 610 SUPERFAMILY Protein kinase-like (PK-like) 338 605 IPR011009 -
Ssu6g0573 610 SMART serkin_6 334 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0573 610 Gene3D Phosphorylase Kinase; domain 1 340 410 - -
Ssu6g0573 610 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Ssu6g0573 610 MobiDBLite consensus disorder prediction 286 316 - -
Ssu6g0573 610 SUPERFAMILY L domain-like 22 203 - -
Ssu6g0573 610 ProSiteProfiles Protein kinase domain profile. 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0573 610 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Ssu6g0573 610 Gene3D Ribonuclease Inhibitor 182 225 IPR032675 -
Ssu6g0573 610 Pfam Protein kinase domain 338 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0573 610 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 610 - -
Ssu6g0573 610 PANTHER LRR RECEPTOR-LIKE KINASE 6 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0573 Ssu-Chr6 8913078 8915558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0573 1 610 Receptor kinase-like Gene Family AT3G42880 49.142 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu6g0573 Pkinase 8.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0573 - - gmx:100816925 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0573 6 8913078 8915558 Ssu6g0573 6 8913078 8915558 ECH
Ssu6g0573 6 8913078 8915558 Ssu1g1618 1 38350992 38355509 PCT