Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0571 ATGTCGAGCTCATCGGAGTATTCGGGATTTTCCGGCCACCGGCAGGCGAAGTCGCCGGCGGATAAGTCCACGTTCTCTCAGACTTGTAGTCTATTGAGCCAATACCTCAAGGAGAAGGGCAGTTTCGGAGACCTTACCCTCGGGATGACATGTACCGTGGAAACAAACgGGTCCCCTGAGACATCGTGTCACTCTGCAACAACCATGGAGTTGTTTCCCACAATCATGACACAGAGGAACCCCACTGCTATGGATTTCCTCTCTCCGCAGACTGCTTATCCTCGCCACTCGGAGGTTCCAACCATTGCTAAATCAAGTGCATTTAAGTCTATGGAGAAGGAGCCTAAAGCTGCTCAGTTGACAATCTTTTATGGCGGGCAAGTTGTTGTGTTTGATGATTTTCCTGCTGAGAAAGTGGAGGAGATAATGTCATTGGCCAGCAAGGGAATATCCCAAAGCCAGAACTCATCTGCATATGCTCACACTCACAACCAGCAAGAGAATCATCCTTCCTTTATTCCTAATATCATCCCCCCTCAAGCACCATCCAGACCGATTGTTTGTGATCTGCCGATTGCTAGGAAAGCTTCACTTCATCGGTTCCTTGAGAAGAGGAAAGATAGAATTGCTGCCAAAGCGCCATATCAAACAAACAATCCCAACTCTGCTTCTAATAAGCCGGCTGAATCCATGTCATGGCTTGGATTAGGGGCTAAACCAACACAAATCTGA 732 0.4781 MSSSSEYSGFSGHRQAKSPADKSTFSQTCSLLSQYLKEKGSFGDLTLGMTCTVETNGSPETSCHSATTMELFPTIMTQRNPTAMDFLSPQTAYPRHSEVPTIAKSSAFKSMEKEPKAAQLTIFYGGQVVVFDDFPAEKVEEIMSLASKGISQSQNSSAYAHTHNQQENHPSFIPNIIPPQAPSRPIVCDLPIARKASLHRFLEKRKDRIAAKAPYQTNNPNSASNKPAESMSWLGLGAKPTQI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0571 243 PANTHER PROTEIN TIFY 10A 19 237 - -
Ssu6g0571 243 MobiDBLite consensus disorder prediction 154 175 - -
Ssu6g0571 243 MobiDBLite consensus disorder prediction 1 21 - -
Ssu6g0571 243 MobiDBLite consensus disorder prediction 209 243 - -
Ssu6g0571 243 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 19 237 IPR040390 -
Ssu6g0571 243 SMART tify_2 113 148 IPR010399 -
Ssu6g0571 243 MobiDBLite consensus disorder prediction 214 229 - -
Ssu6g0571 243 MobiDBLite consensus disorder prediction 154 173 - -
Ssu6g0571 243 Pfam tify domain 114 147 IPR010399 -
Ssu6g0571 243 Pfam Jas motif 191 216 IPR018467 -
Ssu6g0571 243 ProSiteProfiles Tify domain profile. 113 148 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0571 Ssu-Chr6 8884016 8886046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0571 1 239 Tify Gene Family AT1G19180 45.136 3.80e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu6g0571 tify 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0571 K13464 - gmx:100802800 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0571 6 8884016 8886046 Ssu6g0571 6 8884016 8886046 ECH
Ssu6g0571 6 8884016 8886046 Ssu1g1622 1 38457273 38459455 PCT