Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0569 ATGCAGCCACAGAGATTAAGGCAGCATGCCATGATGCAGCCCTCTCTCTACCACCACCCTGCGCTCCTAACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTCGGCAACATTCATCCCCAGGTTACAGAATCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTCATTAGGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTCGATCGCAGTTCAGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGtcactttaatatttttgtcgGTGACCTTAGTCCTGAGGTTACAGATTCAACACTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCGAGGGGATTTGGATTTGTTTCTTTTCGAAATCAGCAGGATGCCCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCACTGCCAATGATGAAAAGCAGAGTTTGGATTCGAAAAGTGTCATGGAGTTGACTAATGGAACATCCGaagAAGGCCAGGAAATAACCAATGATGACGCTCCTGACAAGAATTCTCAATTTACCACTGTTTATGTTGGTAATCTTGCTCCAGAGGTTACTTCTGTTGATCTCCATCATCATTTTCATTCTCTTGGTGCCGGAACTATTGAAGATGTTAGGGTGCAACGGGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGAATTCTCTTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCGGGAACAACCTCTACACCTCTTCCTCCACCTGCTCCTGCGAATGTACCAGGCTTTTCTCTTGCTGGTCTTGCAGCGTATGAACGCCAGATGGCTTTGAGTAAGATGGATGGTGCACATGCCCTTATGCATCAGCAAGGTCAACATGCCCTAAAGCAGGCAGCCATGGGAATGGGTGCTCCTGGAGCTGGTTATGATGCAAGATTCCAGGGTGTTGCGACCACCCAGCACCTAATGTACTATCAGTAA 1236 0.4595 MQPQRLRQHAMMQPSLYHHPALLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTESLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDSTLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGATANDEKQSLDSKSVMELTNGTSEEGQEITNDDAPDKNSQFTTVYVGNLAPEVTSVDLHHHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTTSTPLPPPAPANVPGFSLAGLAAYERQMALSKMDGAHALMHQQGQHALKQAAMGMGAPGAGYDARFQGVATTQHLMYYQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0569 411 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 407 - -
Ssu6g0569 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Ssu6g0569 411 SUPERFAMILY RNA-binding domain, RBD 124 212 IPR035979 GO:0003676
Ssu6g0569 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Ssu6g0569 411 CDD RRM1_TIA1_like 48 118 - -
Ssu6g0569 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Ssu6g0569 411 SMART rrm1_1 47 116 IPR000504 GO:0003723
Ssu6g0569 411 SMART rrm1_1 132 205 IPR000504 GO:0003723
Ssu6g0569 411 SMART rrm1_1 253 322 IPR000504 GO:0003723
Ssu6g0569 411 SUPERFAMILY RNA-binding domain, RBD 244 332 IPR035979 GO:0003676
Ssu6g0569 411 Gene3D - 39 124 IPR012677 -
Ssu6g0569 411 Gene3D - 229 330 IPR012677 -
Ssu6g0569 411 Gene3D - 125 223 IPR012677 -
Ssu6g0569 411 CDD RRM3_TIA1_like 252 326 - -
Ssu6g0569 411 CDD RRM2_PUB1 132 206 - -
Ssu6g0569 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Ssu6g0569 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Ssu6g0569 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Ssu6g0569 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 407 - -
Ssu6g0569 411 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0569 Ssu-Chr6 8872423 8876578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0569 47 320 Eukaryotic Initiation Factors Gene Family AT3G16380 27.397 1.49e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0569 K13201 - gmx:100813736 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0569 6 8872423 8876578 Ssu6g0569 6 8872423 8876578 ECH