Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0566 ATGATGGTGAACCCGTGCAGCGAAAAGCCAGAGGAGCATGGCGATTCGAAATACAAAGGGGTCCGAAAGAGAAAATGGGGCAAATGGGTTTCCGAAATTAGGCTACCCAACAGTCGCCAGAGGATTTGGTTGGGATCCTACGACACCGCCGAGAAGGCCGCTCGCGCCTTCGACGCGGCAATGTTCTGCTTACGTGGCCGCAACGCTAAGTTTAATTTCCCCGACAACCCGCCCGACATCGCCGGCGGAAGGAACATGACGCCGTCGCAAATTCAGGTCGCCGCCGCCCAGTTCGCCAACGCGGGGCCCCACGAGGGCCATTCGGGTCGACCCGAATCGTCGCACGTAATGGAATTGGAATCTCCTTCGCCTTCTATTTCGGAAGGGACCGTGCAAACGGACAGTGACGTCACCACGCATAACGGTTCGCTAACGGATTTGTTCACGCCCGTCGGGTCGAGTGATTACGCATCCGATTACGGGATTTTCCCCGGTTTCGATGATTTGAACGTTGATTTTTATGTGCCGGAAATGCGGAACGATACTTATGGAGAAGAAAACGTGGAAGGGTTCACAGTGGATGAGTCTTTCTTGTGGAGTTTTTGA 606 0.5429 MMVNPCSEKPEEHGDSKYKGVRKRKWGKWVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAMFCLRGRNAKFNFPDNPPDIAGGRNMTPSQIQVAAAQFANAGPHEGHSGRPESSHVMELESPSPSISEGTVQTDSDVTTHNGSLTDLFTPVGSSDYASDYGIFPGFDDLNVDFYVPEMRNDTYGEENVEGFTVDESFLWSF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0566 201 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Ssu6g0566 201 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Ssu6g0566 201 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Ssu6g0566 201 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Ssu6g0566 201 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Ssu6g0566 201 MobiDBLite consensus disorder prediction 1 21 - -
Ssu6g0566 201 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Ssu6g0566 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 201 - -
Ssu6g0566 201 MobiDBLite consensus disorder prediction 118 132 - -
Ssu6g0566 201 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Ssu6g0566 201 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Ssu6g0566 201 MobiDBLite consensus disorder prediction 101 132 - -
Ssu6g0566 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017-LIKE 10 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0566 Ssu-Chr6 8802856 8803461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0566 16 201 AP2-EREBP Transcription Factor Family AT1G19210 50.785 3.20e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu6g0566 AP2 6.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0566 - - gmx:732656 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0566 6 8802856 8803461 Ssu6g0566 6 8802856 8803461 ECH