Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0565 ATGGCAACCTCCCAGCTCACTGCATCATTGAGGAACTTGCCGGCATTTGAAAGGTTTCAACCTTCACCGCTTCGATTTCGTTCTGCTGGGCACGTGAGAATTGGCACACTCACACAAACATCGTTTCCCTCTCTCGTTGTCAAAGCCGCCACTGTTGTCGCCCCCAAGCACACCTCTGTTAAGCCTCTGGGTGATAGAGTACTGGTGAAAATTAAGGATGCAGAGGAGAAGACTGAAGGTGGGATTTTACTGCCAGCAACTGCTCAAAGCAAGCCTCAAGGGGGTGAAGTGGTTGCTGTTGGAGAAGGGAAGTCAGTTGGGAAGAGCAAAGTGGATATTAGTGTGAAGACAGGTGCACAAGTTGTGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGACGATGACATCATTGGTACCCTTGAAACTGATGAGGTCAAGGATCTTAAACCCTTGAACGACAGAGTCTTGATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGAGGTTTGTTGCTCACAGAGGCAACCAAGGAGAAACCATCTATTGGAACAGTGATAGCAGTTGGTCCGGGGCCTCTGGATGTGGAAGGTAACAGAAAATCATTGTCCATCACACCTGGGAATACAGTTTTGTACTCCAAATATGCGGGGAATGACTTCAAGGGCAAAGATGGTTCTGACTACATTGCCTTGAGGGCCTCAGATGTCATGGCTATCCTGTcctaa 756 0.4709 MATSQLTASLRNLPAFERFQPSPLRFRSAGHVRIGTLTQTSFPSLVVKAATVVAPKHTSVKPLGDRVLVKIKDAEEKTEGGILLPATAQSKPQGGEVVAVGEGKSVGKSKVDISVKTGAQVVYSKYAGTEVEFNGSKHLILKDDDIIGTLETDEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDVEGNRKSLSITPGNTVLYSKYAGNDFKGKDGSDYIALRASDVMAILS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0565 251 SUPERFAMILY GroES-like 157 250 IPR011032 -
Ssu6g0565 251 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 PANTHER GROES CHAPERONIN 1 251 - -
Ssu6g0565 251 Pfam Chaperonin 10 Kd subunit 158 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 ProSitePatterns Chaperonins cpn10 signature. 158 182 IPR018369 GO:0005524|GO:0006457
Ssu6g0565 251 CDD cpn10 158 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 PRINTS 10kDa chaperonin signature 116 128 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 PRINTS 10kDa chaperonin signature 137 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 PRINTS 10kDa chaperonin signature 60 75 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 PRINTS 10kDa chaperonin signature 82 103 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 PIRSF Cpn21 1 251 IPR017416 GO:0006457|GO:0046914|GO:1901671
Ssu6g0565 251 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 SMART Cpn10_2 157 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 ProSitePatterns Chaperonins cpn10 signature. 60 84 IPR018369 GO:0005524|GO:0006457
Ssu6g0565 251 SUPERFAMILY GroES-like 58 151 IPR011032 -
Ssu6g0565 251 CDD cpn10 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 Hamap Co-chaperonin GroES [groES]. 157 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu6g0565 251 Gene3D GroES chaperonin 53 152 IPR037124 GO:0006457
Ssu6g0565 251 Gene3D GroES chaperonin 153 251 IPR037124 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0565 Ssu-Chr6 8783831 8785649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0565 1 251 Calmodulin-binding Proteins AT5G20720 73.047 1.10e-129 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0565 K04078 - gmx:100804915 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0565 6 8783831 8785649 Ssu6g0565 6 8783831 8785649 ECH
Ssu6g0565 6 8783831 8785649 Ssu1g1627 1 38888011 38890341 PCT