Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0564 ATGAACCAACCCCAGAATACACAGAAATCACTTACCATCACTAGAGCTCCCTCTACACTAACAGATGGAGATGCCCCATCATGCTCAACCTCTCCATCTACTAATAACTGCCAGGTGTCTCCTCCAAACCTCCTGAAAATAAATCAGCAACTACCAGCCACATTAGGGGGGAGTTTGATAGTTGAGCCCACTAGTAATCTGATGCAAGAGCTTCACAGTAAGCCTGACATGCAGATCAACCATGAGTTGCTCAATGTAAAAGGACCTGACCAGTTGAAGTATAAAGGGACAATCACTGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGTCTTGATCCTGGTAATGTCCAGCAGAACTTGCCACTTTCCAACTTCTGCATGGAAGGGGATGTCCAATCACACCCAAGAAACAGTTTACCATTTGATTCTAATCTGGATGGTCTAACCCCTGATACTATGCTTTTAAGGGGGTATGACTCTCCAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCAAGAGATATTGAAACCGAGCTGTCAACTGCTGATATCAGCTCACAGTCGTTTGGAGTGCCAAACTTGCCTTTCAAGCCTGGTTGCTCAAGTGATGTTGGCATCAATGATACTGGGGTtctgaataataataatggctTGCGGGCTAACCAAACTCCTCGAATGCGGACATACACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTAGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACTGATTGGAAATTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGATGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCTCCAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGAAGATAACTCTGCTGCCTCGTTTAATAGGTAA 1083 0.4331 MNQPQNTQKSLTITRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKINQQLPATLGGSLIVEPTSNLMQELHSKPDMQINHELLNVKGPDQLKYKGTITDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDVQSHPRNSLPFDSNLDGLTPDTMLLRGYDSPKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNLPFKPGCSSDVGINDTGVLNNNNGLRANQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGGNVPISNQACSGTDSGNAWRGQYEDNSAASFNR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0564 360 MobiDBLite consensus disorder prediction 1 40 - -
Ssu6g0564 360 Pfam AUX/IAA family 228 318 IPR033389 -
Ssu6g0564 360 PANTHER AUXIN RESPONSE FACTOR 19 5 348 - -
Ssu6g0564 360 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 348 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu6g0564 360 SUPERFAMILY CAD & PB1 domains 245 310 - -
Ssu6g0564 360 ProSiteProfiles PB1 domain profile. 232 325 IPR000270 GO:0005515
Ssu6g0564 360 Gene3D - 228 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0564 Ssu-Chr6 8780787 8782099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0564 3 360 B3 DNA Binding Superfamily AT1G19220 60.753 1.32e-138 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu6g0564 AUX_IAA 6.8e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0564 K14486 - gmx:100816054 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0564 6 8780787 8782099 Ssu6g0564 6 8780787 8782099 ECH
Ssu6g0564 6 8780787 8782099 Ssu1g1628 1 38901250 38908994 PCT