Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0563 ATGCTAATTGCTAAACCTGGTTGCACATCGGCTACAGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGTTTGCTGGAGATTCTGTACTTTTTATCAgAGATGAAAAACAGCATCTTCTTTTAGGTATAAGGCATGCTAATAGACAGCAACCAGCACTCTCTTCATCAGTGATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTGCAAGTAACAGCCcatttactatattttacaACCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCATTGGCCAAGTGTAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAGTCTGGGGTACGCAGATATATGGGTACAATCACTGGGATTAGTGACTTGGATCCTGTTCGATGGAAGAACTCACAGTGGCGCAATATTCagGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCCAGTAGGGTTTCAATTTGGGAAATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTCTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGATGAGTCAGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAATCTTTCCTGGTTTTAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAATCAGCTCTCTGCTGCTCAATCAGGATGTTTCCCATCCATGCTTCCATCCAATACACTAAATGGTAACCTTAGCACTGATGACCCATCCAAGTTATTGAACTTTCAAGCTCCTGTCCTCTCTGCCCCAAGTCTTCAATTAAACAAACCTAATCTACCAAATCAAATCAACCAAATGCAACAGTCCCCAGTGTCATGGcctcagcaacaacaacaacagctgCAGCAACAGCAACAGCAACAGCAACAGCGACAACAGCTGCAGCAGCAGCAACtacagcagcagcagcagctaCAGTCATTGCTGCAAATACCGATAAACCAGCAGAGGCAACAGCAGCTGCCTGAACCACAAAACCTGCCATTGCTGCAGCAACTGCCTCAGCAGCTAGGACAACAGCCCCAGAAACAGCAACAGTCAAATCAACATGCTACTGTTATGAATAATGGGGTAGTTGCTTCTAACCAGATTACAAATCAGTTTGTACAACAACCAATTGCATATGGTCAGCTTCAGCAACAACAATTACTTTCAGGGGGTATCCCACCCCAGCAAGGTATCCAGCCAGCTAGTAAGAACACATTCCCATTGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAGCAAGCTAGTCTCTTGCAGAGGCAGCAGCAGCACACACAGTTGCAACAATCTCCACTGCAGTTGTTGCAACAAAACCTGCCACAGAGAGCACCACAACAACCACCAGCTACTCAAATGTTACAGCAAAACCCCTCAGAGCAACAACTTCACCTACAGTTGCTACAGAAATTGCAGCAGCAGCAAGCAGCAGCAACAACTTCTTTCCACATCTACCCCACTTTTGCAGTCTCAGCTTCTACAACAACAAAATACTCACCAACAAAACCAACAATTACCGCAGCCCCCGCCACCTATATCTCAGCATCAGCCTCAACAACTTGGCAATAA 1725 0.4371 MLIAKPGCTSATGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQHLLLGIRHANRQQPALSSSVISSDSMHIGILAAAAHAAASNSPFTIFYNPRASPSEFVVPLAKCNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDIENAFKRAMPWLGDDFGMKDASSSIFPGFSLVQWMSMQQNNQLSAAQSGCFPSMLPSNTLNGNLSTDDPSKLLNFQAPVLSAPSLQLNKPNLPNQINQMQQSPVSWPQQQQQQLQQQQQQQQQRQQLQQQQLQQQQQLQSLLQIPINQQRQQQLPEPQNLPLLQQLPQQLGQQPQKQQQSNQHATVMNNGVVASNQITNQFVQQPIAYGQLQQQQLLSGGIPPQQGIQPASKNTFPLTSLPQDSQFQQQIDQQASLLQRQQQHTQLQQSPLQLLQQNLPQRAPQQPPATQMLQQNPSEQQLHLQLLQKLQQQQAAATTSFHIYPTFAVSASTTTKYSPTKPTITAAPATYISASASTTWQ 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0563 574 Pfam Auxin response factor 81 163 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu6g0563 574 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 532 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu6g0563 574 MobiDBLite consensus disorder prediction 298 322 - -
Ssu6g0563 574 MobiDBLite consensus disorder prediction 433 468 - -
Ssu6g0563 574 Gene3D - 118 189 - -
Ssu6g0563 574 Coils Coil 324 358 - -
Ssu6g0563 574 Gene3D - 8 56 IPR015300 -
Ssu6g0563 574 PANTHER AUXIN RESPONSE FACTOR 19 13 532 - -
Ssu6g0563 574 SUPERFAMILY DNA-binding pseudobarrel domain 13 84 IPR015300 -
Ssu6g0563 574 ProSiteProfiles B3 DNA-binding domain profile. 1 57 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0563 Ssu-Chr6 8778071 8780710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0563 13 316 B3 DNA Binding Superfamily AT1G19220 79.934 1.50e-163 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0563 K14486 - gmx:100805456 588.956