Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu6g0559 | ATGCAAACACAACGAATTAACACTCTCGCCTTCACGCTCCTCCTCTTGTTGCTATCTCCGCCACGCGCCGCCGCCGCAAGGCCATCGCGAGATCCGCTCCGTTCATGGTGCGCCGAGGCCAGGTACCCCGCCCTCTGCGTCCAGACCCTCTCCAACTTCTCAAACCCCGCCGCGAAGCCCTTGGACCTGGCCCAAGCCGCCGTCAAGGCCAGCCTGGCCCACGCGCGCACCCTCTCCGTCTACCTCAAGACGCTAAACGCCACGTCGTCGTCGCGCTTCGGGAACAGGCAGCGAGTTGCGCTGAGTGACTGCGTGGAGCAGATTTCCGACTCGGTGACTCAGCTGAGCAAGACGCTGAACGAGTTGCAGCACCTGCGCACCGGAACCTTCCAGTGGCAGATGAGCAACGCCCAGACGTGGACCAGCGCCGCCCTCACCAACGGCGACACCTGCCTCACCGGCTTCAACGACggcgccgccgccgccgccgccgacGGGAGGCTCATGTTGGAGGTGAAGCGTAGGGTCACGGACGTAACCATGTTCACCAGTAACGCGCTGTACCTGATTACTCGCCTCGGTGATAGCGGCAGTGGGAAGCCTCGCGTCAATTTCAGAAACTGA | 624 | 0.5978 | MQTQRINTLAFTLLLLLLSPPRAAAARPSRDPLRSWCAEARYPALCVQTLSNFSNPAAKPLDLAQAAVKASLAHARTLSVYLKTLNATSSSRFGNRQRVALSDCVEQISDSVTQLSKTLNELQHLRTGTFQWQMSNAQTWTSAALTNGDTCLTGFNDGAAAAAADGRLMLEVKRRVTDVTMFTSNALYLITRLGDSGSGKPRVNFRN | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu6g0559 | 207 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 5 | 201 | - | - | |
| Ssu6g0559 | 207 | SMART | PMEI_2 | 28 | 189 | IPR006501 | GO:0004857 | |
| Ssu6g0559 | 207 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 29 | 194 | IPR035513 | - | |
| Ssu6g0559 | 207 | CDD | PMEI-like_3 | 35 | 193 | - | - | |
| Ssu6g0559 | 207 | PANTHER | PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR | 5 | 201 | - | - | |
| Ssu6g0559 | 207 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 8 | 193 | IPR006501 | GO:0004857 | |
| Ssu6g0559 | 207 | Pfam | Plant invertase/pectin methylesterase inhibitor | 33 | 188 | IPR006501 | GO:0004857 | |
| Ssu6g0559 | 207 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 32 | 193 | IPR035513 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu6g0559 | Ssu-Chr6 | 8690423 | 8691046 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu6g0559 | 27 | 206 | Carbohydrate Esterase | AT5G53370 | 28.729 | 1.59e-12 | 63.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu6g0559 | - | - | gmx:100810705 | 286.189 |
Event-related genes