Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0552 ATGGATGATGCTGGAGGTTCCAAATTGACTGGAATTAAGCAGGTTGTAAGATTGAAGGAAATGTTTCAGAAGTGGCAAACTGTGACTCAGGGCTCAAAAGAGTCCAACAATCATTCTGATGTGACTACTCATGGGGGCATATCACCAATTATTAACAAAAGGCTAACAAATGTTGTGTATtgtgactctgatgaggatagCTGCTACAGCCCTCAACCACCACATGATGTTCCCAAAGGGTACTTAGCCGTCTATGTTGGGCCTGAGCTTCGGAGGTTTATCATTCCCACAAGCTACCTTAGCCACTCTTTGTTCAAGGTTTTGCTGGAAAAGGCTGCAGAGGAATTTGGGTTTGATCAGAGTGGTGGACTCACCATTCCATGTGAAATTGAGACCTTTAAATACCTCTTGAATTGCATGGAGAACCATGATGGCAGCTCCAGTAAGTTAATTGcgttatttaatatcatttcatAG 477 0.3962 MDDAGGSKLTGIKQVVRLKEMFQKWQTVTQGSKESNNHSDVTTHGGISPIINKRLTNVVYCDSDEDSCYSPQPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAAEEFGFDQSGGLTIPCEIETFKYLLNCMENHDGSSSKLIALFNIIS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0552 158 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 151 IPR003676 GO:0009733
Ssu6g0552 158 Pfam Auxin responsive protein 63 139 IPR003676 GO:0009733
Ssu6g0552 158 PANTHER SMALL AUXIN-UP RNA-RELATED 7 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0552 Ssu-Chr6 8618091 8618567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0552 1 143 Calmodulin-binding Proteins AT3G43120 70.345 3.71e-73 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0552 K14488 - gmx:100795275 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0552 6 8618091 8618567 Ssu6g0552 6 8618091 8618567 ECH
Ssu6g0552 6 8618091 8618567 Ssu1g1637 1 39400781 39405154 PCT