Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0551 ATGGGTCACGTTGAAAGTGGAGCTACATTTTTGGCTGCACTTACACTCTCGCTCCACCTTGTCCCAGCAACCACCCTTTTCCCTCACTCTCCCCTGGACGGCGCCGTTAGGATCGTGAGGGTTCGGAGGGACGGCGCGGGGGACTTCAAGACGGTGACGGACGCCGTTAACAGCATTCCGTCAGGGAACAAGAGGCGCGTGGTGGTGTGGATCGGCACGGGCGAGTATCGCGAGAAGATCACCGTAGATAGGTCGAAGCCCTTCGTTACGTTTTACGGAGAAAGGAATGACAACGACAGCGACATGCCCATCATAACGTACGACGCCACGGCGTTGCGGTATGGGACGGTAGACAGCGCCACCGTCGCTGTCGACTCCGACTACTTTGTGGCCGTCAATGTGGCCTTTGTGAACTCGTCTCCTATGCCAGAAGAAAATAGTGCTGGAGCACAAGCATTAGCCATGAGGATATCAGGGGACAAGGCTGCATTCTACAACTGCAAGTTCGTTGGCTTTCAGGACACTTTGTGCGATGATAAAGGCAGGCATTTTTTCAAAGACTGCTACATCCAAGGCACCTACGATTTCATCTTTGGAAATGGAAAGTCCATATACTTGAGAACTACCATAGAATCGGTGGCAAAGGGTTTGAGTGTTATCACAGCACAAGGTAGGGAAAGCATGGCACAAGACACTGGATTCACTTTTTTGAACTGCAACATAACGGGAGGTGGTAACGGGAACACTTACCTTGGGCGTGCCTGGAAGAAGAGCCCTAGGGTAGTGTATTTTACTTGTTATAGGACAATCTACTATGGAGAATATAGGTGCATGGGACCAGGAGCTGTTTCCTCCGGCCGCGTAAAATTTCGCAAGGTACTGTCTGATGAAGAAGTAAAGCCCTTCTTGAGCGTGGCTTATATTCATGGAGGAAAGTGGGTTGTCCCACCTCCCAAGCTGTGA 963 0.5109 MGHVESGATFLAALTLSLHLVPATTLFPHSPLDGAVRIVRVRRDGAGDFKTVTDAVNSIPSGNKRRVVVWIGTGEYREKITVDRSKPFVTFYGERNDNDSDMPIITYDATALRYGTVDSATVAVDSDYFVAVNVAFVNSSPMPEENSAGAQALAMRISGDKAAFYNCKFVGFQDTLCDDKGRHFFKDCYIQGTYDFIFGNGKSIYLRTTIESVAKGLSVITAQGRESMAQDTGFTFLNCNITGGGNGNTYLGRAWKKSPRVVYFTCYRTIYYGEYRCMGPGAVSSGRVKFRKVLSDEEVKPFLSVAYIHGGKWVVPPPKL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0551 320 SUPERFAMILY Pectin lyase-like 38 314 IPR011050 -
Ssu6g0551 320 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 33 319 - -
Ssu6g0551 320 Gene3D - 35 317 IPR012334 -
Ssu6g0551 320 Pfam Pectinesterase 40 266 IPR000070 GO:0030599|GO:0042545
Ssu6g0551 320 PANTHER PECTINESTERASE 33 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0551 Ssu-Chr6 8569759 8573092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0551 33 320 Carbohydrate Esterase AT5G07410 49.837 1.09e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0551 K01051 - gmx:100790786 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0551 6 8569759 8573092 Ssu6g0551 6 8569759 8573092 ECH