Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0544 atgggaagagaaagagaggcaACAAAGGTAGCTTACACAGTGGAGCAGCTTGTAGCCTTCAATCGATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTTAACGAACAgGTTTCATCGCAAACATACAGCCTGGACGCGAATCTGTGCCTTCTTCGCCTCTACCAGTTTGAACCAGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTTAAGGCACTCATGGCAATGCCGGCTCCAGATTTCAGCCTTTGTCTATTTTTGATTCCAGAACGAGTGcAAATGGAGGAGCAGTTCAAGACTTTGATTGTTCTGTCTCACTATTTGGAGACAGGAAGATTCCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCcagGATTTGAGCAGGCAATCCAAGGCTATGCAATCCATGTCCTTTCCCTGACTTACCAAAATATTCCTAGAACTGTTCTTGCTGAGGCTATTAACATAGAAGGTTTATCCTTGGACAAATTCCTTGAACATCAAGTAGCCAACAGTGGTTGGGTTATTGAGAAAAGCCAAGGCAGGGGTCAACTCATTGTCCTTCCTAGAAATGAATTTAATGACCCAGCTTTGAAGAAAAACGCTGCTGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGA 690 0.4203 MGREREATKVAYTVEQLVAFNRYNPDILPDLENYVNEQVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQNIPRTVLAEAINIEGLSLDKFLEHQVANSGWVIEKSQGRGQLIVLPRNEFNDPALKKNAADSVPLEHITRIFPILS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0544 229 SUPERFAMILY "Winged helix" DNA-binding domain 134 226 IPR036390 -
Ssu6g0544 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 9 228 IPR009374 GO:0003743|GO:0005737|GO:0005852
Ssu6g0544 229 Gene3D - 125 228 IPR036388 -
Ssu6g0544 229 ProSiteProfiles PCI domain profile. 44 203 IPR000717 -
Ssu6g0544 229 SUPERFAMILY ARM repeat 11 131 IPR016024 -
Ssu6g0544 229 Gene3D ARM repeat; domain 1 7 122 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Ssu6g0544 229 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 5 229 IPR009374 GO:0003743|GO:0005737|GO:0005852
Ssu6g0544 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT K 9 228 - -
Ssu6g0544 229 Pfam CSN8/PSMD8/EIF3K family 64 190 IPR033464 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0544 1 229 Eukaryotic Initiation Factors Gene Family AT4G33250 74.459 1.71e-127 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0544 K15028 - gmx:100306445 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0544 6 8397753 8401956 Ssu6g0544 6 8397753 8401956 ECH