Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0537 ATGGCGTTTCAGGATTTTGACCTCATCTCAGAGCGGCGAAGAAACGAGAAGCGGCAAAAGATGAGGAAGAGGATCATGATTGGCGTGGTCTCTTCCGTTCTTCTTGTCGGCATGATAGGTGCGGTACTCTTCGTCGTGGTTAGAAACGGCAACGGCAACGGCAACGGCGACGCTGGCAATAACAAGAGTAACAGCAATAAGGCACAGCACCAAGAATCACCAACCGCTGCCACCAGCAAGGAACACGTGTCACCCTCTCAGAAGATGGTGAAACTGGTGTGCAGCTCCGCGGACTTCAAAGACAAATGTGAAGAACCCCTTAACAAGGCCATGCAGGACGACCCCAAACTCACCCAACCCAAAGACCTTCTCAAGCTGTATGTGAAGCTCGCTGAGGAAGAGGTTAGCAAAGCCTTCAACAAAACCGACTCCATGGAGTTTCAATCTGAGGAAGAGAAAGGAGCGTTTGAAGACTGCAAGAAGCTGTTTCAGGACGCCAAGGATGACATAGCAACCTCCATCTCCGAACTCGGCAAAATCGAGCTGAAGATGCTTTCTGAGAGGTCTCCTGACTTGAACAGCTGGCTCAGCGCTGTCATCTCCTTCCAGCAAAACTGCGTCGATGGCTTTCCTGAGGGGAACATGAAGACTGACCTTCAAAATCTCTTCAAGGATTCCAAGGAATTCGTTAGCAACTCCCTTGCCATTCTGTCTCAGGTGGCATCGGCTGTTTCTACTCTCCGAACACTTGCGTCGCGTCGCCGTTTGTTGCTGTCTCAGAATTCCAACTCCAACTCCCCGGCTGCTTCACTAGACAAAACTGATGGCCTTCCTTCTTGGCTCAACCATGATGACCGAAGGATTTTGAAGGCTACGGATAACAAACCTACACCTAATGTCACTGTGGCAAACGATGGCAGTGGAGACTTCAAAACCATCTCTGAAGCCTTAAATGctgtccctcaaaattttgaaggacGGTATGTGATTTATGTTAAAGAAGGAGAATACGATGAGGCGGTGACAGTAACaaagaaaatgcaaaatatAACCATGTATGGTGATGGATCCCAAAAGAGCACCATCACTGGCAGCAAAAACTACAGGGACGGAGTCAGGACTTTCCAAACTGCAAGTTTTGTGGTAGAGGGAGACGGATTCATAGGCCTAGCAATGGGATTCAGAAACACTGCAGGCCCTGAAGGGCACCAAGCAGTGGCAGCAAGAGTGCAGGCAGATCGTGCAGTGTTTGCCAACTGTCGGTTTGAGGGCTACCAAGACACTCTATACACCCAAGCCCACAGACAATTCTACAGGAGCTGCATCATTACAGGCACAATTGATTTCATCTTTGGTGATGCAGCTGTAGTGCTCCAGAACTGCAACATATTTGTTAGGAAGCCACTGGACAACCAGCAGAACATGGTGACTGCTCAAGGGAGAATGGACAGGCAACAAGCCACTGGAATTGTGCTGCAAAAGTGTGAGATCAAACCTGATGACTCACTGGTTCCAGAGAAGGACAAGATCAGGAGCTACCTTGGGAGGCCATGGAAGGAGTACTCAAGAACCATTGTTATGGAATCAGAAATAGATGATTTCATTCACCCTGATGGGTGGGCAGTTTGGATGGGAGACTTTGCACTCAAAACACTGTACTATGCTGAGTACAGCAACACAGGACCTGGTGCCAGCACCAATGCTAGGGTCAATTGGCCTGGTTACAAAGTCATTGACAAGGATGAGGCTAGCAAGTTTACTGTGGGGTCTTTCCTGAAAGGCACATGGCTCAATAGCACAGGAGTGCCCACTGTGCAAGGCTTGTACAATTAA 1833 0.4795 MAFQDFDLISERRRNEKRQKMRKRIMIGVVSSVLLVGMIGAVLFVVVRNGNGNGNGDAGNNKSNSNKAQHQESPTAATSKEHVSPSQKMVKLVCSSADFKDKCEEPLNKAMQDDPKLTQPKDLLKLYVKLAEEEVSKAFNKTDSMEFQSEEEKGAFEDCKKLFQDAKDDIATSISELGKIELKMLSERSPDLNSWLSAVISFQQNCVDGFPEGNMKTDLQNLFKDSKEFVSNSLAILSQVASAVSTLRTLASRRRLLLSQNSNSNSPAASLDKTDGLPSWLNHDDRRILKATDNKPTPNVTVANDGSGDFKTISEALNAVPQNFEGRYVIYVKEGEYDEAVTVTKKMQNITMYGDGSQKSTITGSKNYRDGVRTFQTASFVVEGDGFIGLAMGFRNTAGPEGHQAVAARVQADRAVFANCRFEGYQDTLYTQAHRQFYRSCIITGTIDFIFGDAAVVLQNCNIFVRKPLDNQQNMVTAQGRMDRQQATGIVLQKCEIKPDDSLVPEKDKIRSYLGRPWKEYSRTIVMESEIDDFIHPDGWAVWMGDFALKTLYYAEYSNTGPGASTNARVNWPGYKVIDKDEASKFTVGSFLKGTWLNSTGVPTVQGLYN 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0537 610 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 88 239 IPR035513 -
Ssu6g0537 610 SMART PMEI_2 85 236 IPR006501 GO:0004857
Ssu6g0537 610 PANTHER PECTINESTERASE 14 608 - -
Ssu6g0537 610 PANTHER PECTINESTERASE 14 608 - -
Ssu6g0537 610 TIGRFAM PME_inhib: pectinesterase inhibitor domain 79 240 IPR006501 GO:0004857
Ssu6g0537 610 MobiDBLite consensus disorder prediction 55 84 - -
Ssu6g0537 610 ProSitePatterns Pectinesterase signature 2. 443 452 IPR033131 -
Ssu6g0537 610 Gene3D Invertase/pectin methylesterase inhibitor family protein 86 241 IPR035513 -
Ssu6g0537 610 Gene3D - 293 608 IPR012334 -
Ssu6g0537 610 SUPERFAMILY Pectin lyase-like 297 607 IPR011050 -
Ssu6g0537 610 Pfam Pectinesterase 299 594 IPR000070 GO:0030599|GO:0042545
Ssu6g0537 610 Pfam Plant invertase/pectin methylesterase inhibitor 89 236 IPR006501 GO:0004857
Ssu6g0537 610 CDD PMEI-like_3 92 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0537 Ssu-Chr6 8282080 8284670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0537 1 610 Carbohydrate Esterase AT2G26450 46.603 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0537 - - gmx:100784679 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0537 6 8282080 8284670 Ssu6g0537 6 8282080 8284670 ECH
Ssu6g0537 6 8282080 8284670 Ssu1g1660 1 40012097 40104462 PCT