Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0536 ATGGCTATTTCATCTCCCAAactcttcctccttctcttagCATTCTTCCTCTCATACACTTGGGCTGTCAAATCCTCCAATGCTTCCACAACCCCAGCATTGCATGCAAGCCTCTCTTCCCTAAACGGAACCAACCCATTTCCTGAAGTTTGCTTCAACTCATCTAAGCTTTCCATCTCAATAAACATAAATCCAAACATCATCAACACCCTTCTTCAGTCCCTCCAAGCAGCAATATCTGAAGCCACAAAACTATCTGATCTATTAAACATTGCTGGACACTCAAACATCATAGAGAACAAAATAGGAGCAGTCCAAGACTGTAGAGAACTTCAACAATCCACCTTAACTTCCTTAAAACGATCACTATCAGGGATCCGTTCCCAAGACTCCAGAAAGCTAGTTGGCGCAAGAATCTACCTCAGTGCAGCCCTCACCAACAAGGACACGTGTCTAGAGAGTTTAGATTCTGCTTCGGGTACCCTTAAGCCAGTTCTAGTGAATTCTGTGATCAACTCTTACAAGCATGTCAGTGACTCTCTTTCGATGCTCCCTAAGCCTGAGATGAAGGCTTCCAAAGGACACAAGAACCGGCGTTTGTTGTGGTTGTCAAGGAAAAACTATCGGCTCTTGCAAAACAATGATGGAGTGCTTGTTGTGGCTGCAGATGGAACGGGGAACTTTAGCACCATCACTGAGGCTATCAACTTTGCTCCAAATAACAGCGTTGGTAGGACAGTAATCTATGTCAAAGAAGGGACTTACGAGGAAAATGTTGAAATCCCAGGTTATAAGACCAATATTGTTCTGCTTGGCGATGGAAAGGATGTCACTGTTATTACTGGCAACAGAAGTGTCATTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTCTCTGGTGAGGGCTTTCTGGCACGTGATATAACTTTTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTGGCCTTGAGAGTGAATGCAGACTTCGCTGCTTTTTACAGGTGTGCCATGAATGGTTACCAAGACACTCTTTATGTTCACTCCTTTAGACAATTCTACAGGGAGTGTGACATTTATGGGACCATAGATTTCATATTTGGGAATGCAGCAGTGGTTATACAAGCATCTAACATTGTGTCCAGGATGCCTATGCCTGGTCAATTCACTGTCATCACTGCACAGTCCAGAAATTCCCCTGATGAGGACACTGGAATCTCAATCCAAAACTGCTCAATTCTGGCTACCACAGATTTGTACTCCAATTCTGGGAGTGTCAAGAGCTACCTCGGGAGGCCATGGAGGGTCTATTCTCGCACTGTTTACCTTGAGTCCTACATTGATGTATTTCTTGACCCAACGGGGTGGACCGAGTGGTCTGACGATCAAGGCTTGGACACTTTGTATTATGGAGAGTATGCCAATTATGGGCCTGGTTCAGGGACAGATAACCGAGTCCAGTGGCCTGGGTACCATGTAATGGATTACGACAGTGCCTACAACTTCTCTGTTTCAGAGTTTATTATCGGTGATGCTTGGCTTGGGTCTACTTCCTTCCCTTATGATGATGGGATCTAA 1584 0.4457 MAISSPKLFLLLLAFFLSYTWAVKSSNASTTPALHASLSSLNGTNPFPEVCFNSSKLSISININPNIINTLLQSLQAAISEATKLSDLLNIAGHSNIIENKIGAVQDCRELQQSTLTSLKRSLSGIRSQDSRKLVGARIYLSAALTNKDTCLESLDSASGTLKPVLVNSVINSYKHVSDSLSMLPKPEMKASKGHKNRRLLWLSRKNYRLLQNNDGVLVVAADGTGNFSTITEAINFAPNNSVGRTVIYVKEGTYEENVEIPGYKTNIVLLGDGKDVTVITGNRSVIDGWTTFRSATLAVSGEGFLARDITFENKAGPEKHQAVALRVNADFAAFYRCAMNGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVIQASNIVSRMPMPGQFTVITAQSRNSPDEDTGISIQNCSILATTDLYSNSGSVKSYLGRPWRVYSRTVYLESYIDVFLDPTGWTEWSDDQGLDTLYYGEYANYGPGSGTDNRVQWPGYHVMDYDSAYNFSVSEFIIGDAWLGSTSFPYDDGI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0536 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 184 IPR035513 -
Ssu6g0536 527 Pfam Pectinesterase 218 513 IPR000070 GO:0030599|GO:0042545
Ssu6g0536 527 Pfam Plant invertase/pectin methylesterase inhibitor 46 183 IPR006501 GO:0004857
Ssu6g0536 527 CDD PMEI-like_3 46 183 - -
Ssu6g0536 527 SMART PMEI_2 36 183 IPR006501 GO:0004857
Ssu6g0536 527 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 184 IPR006501 GO:0004857
Ssu6g0536 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 186 IPR035513 -
Ssu6g0536 527 Gene3D - 213 527 IPR012334 -
Ssu6g0536 527 SUPERFAMILY Pectin lyase-like 216 524 IPR011050 -
Ssu6g0536 527 PANTHER PECTINESTERASE 7 526 - -
Ssu6g0536 527 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Ssu6g0536 527 PANTHER PECTINESTERASE 7 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0536 Ssu-Chr6 8278673 8280925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0536 35 527 Carbohydrate Esterase AT2G26440 65.564 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0536 - K01051 pvu:PHAVU_003G126600g 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0536 6 8278673 8280925 Ssu6g0536 6 8278673 8280925 ECH