Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0535 ATGGCTGTTCCTTCTGTAAAGCAGCCACGGGCAACACCCACTCTTACCCTCACATTCACTTTCTCGTTGGTGCTCTTTCTCGCGCTCTGCACCCCACTGGCTGCTCGCACCGATTTCGCGGGCTCCGCCTGCCTCAAAGTTTCCCCCACCCAATTCGGCGGCTCAGTGACCGAAGTCATTGGTATCATACAACAAGTCGCATCCATTCTGTCACGCTTCACCTCTCGTTTCGCAGACTTCCGCCTCGCCACTGCCGTTGCTGACTGCCTTGACTTGCTCGACCTCTCCTCCGACGTCCTCTCCTGGTCTCTCTCCGCCACTCAGAACCCCAAAGGTATCAAATTAACACACTctCTTCTTGCGCAGGTGCTGCCTGTACAGGATCAATTCGCCACCACCAGCAAGAAGGGGCAATTTCCTTCGTGGGTTAGACCCAACGATAGGAAGCTGCTGCAAGCGAGTGGGGTGGTTCCTGATGCTGTTGTGGCTGCGGATGGGAGCGGGAACTACGCTACCATCGTGGATGCGGTGCTTGCGGCACCGGATTATAGCATGAAACGTTTTGTGATTTATGTAAAGAAGGGTGTTTATATTGAGAACGTGGAGATCAAGAAGAAGAAATGGAACATCATGATGGTTGGAGATGGGATGGATGCCACGATTATCTCCGGTAACCGGAGTTTCGTCGACGGTTGGACCACCTTCCGATCACCTACATTTGGTATGTATGCCACCACTCACACTGATGctaatcttttctcttcttttctcttctttctttaa 783 0.507 MAVPSVKQPRATPTLTLTFTFSLVLFLALCTPLAARTDFAGSACLKVSPTQFGGSVTEVIGIIQQVASILSRFTSRFADFRLATAVADCLDLLDLSSDVLSWSLSATQNPKGIKLTHSLLAQVLPVQDQFATTSKKGQFPSWVRPNDRKLLQASGVVPDAVVAADGSGNYATIVDAVLAAPDYSMKRFVIYVKKGVYIENVEIKKKKWNIMMVGDGMDATIISGNRSFVDGWTTFRSPTFGMYATTHTDANLFSSFLFFL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0535 260 PANTHER PECTINESTERASE 48 112 - -
Ssu6g0535 260 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 48 112 - -
Ssu6g0535 260 PANTHER PECTINESTERASE 130 242 - -
Ssu6g0535 260 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 130 242 - -
Ssu6g0535 260 SUPERFAMILY Pectin lyase-like 158 245 IPR011050 -
Ssu6g0535 260 Gene3D - 153 253 IPR012334 -
Ssu6g0535 260 Pfam Pectinesterase 159 246 IPR000070 GO:0030599|GO:0042545
Ssu6g0535 260 CDD PMEI-like_4 22 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0535 Ssu-Chr6 8267332 8268438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0535 21 242 Carbohydrate Esterase AT3G43270 40.702 1.22e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0535 K01051 - gmx:100814987 296.589