Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0530 ATGGGTTTCTACACTGAAGACCCTATCTCTGGCTTGACAATAGGTCAGGCCATATACGAGGTAGCTCTGATCGTTGCAGTTCTGAGATGGGTGTTGTGCTTGGTTTTCAGAGTGATCAATGATAGAAAGACGCGGTCTGATGAGACCCCACCCGAGCCTTGTTCCCAGATGACAAGGGACAAGGACGACACTCTCGTATTGACCACGTTCGGCGAGATTGTGGAGAGGCTGCCACAAACGGAGGACACGTGTGCTGTTTGCTTGAGCCAGCTGAATATGGAGGACGAGGTTAGGGAGCTGATGAACTGTTACCATGTGTTCCACAGGGAGTGCATAGACAGGTGGTTGGAGCATGAGCATGAGAACCACAGCCCCACCTGTCCACTCTGCAGGGCTCCTTTGCTGAGTTCTTCTTGTCACCACAGCTCTACCACATGCCTGCCTCCTCCTCAGCCTAGTTGGGCTGTGGAGAGACTTCTCTATCTTTTTGGGGATGATCTGCTTCCTTGTTAG 513 0.5185 MGFYTEDPISGLTIGQAIYEVALIVAVLRWVLCLVFRVINDRKTRSDETPPEPCSQMTRDKDDTLVLTTFGEIVERLPQTEDTCAVCLSQLNMEDEVRELMNCYHVFHRECIDRWLEHEHENHSPTCPLCRAPLLSSSCHHSSTTCLPPPQPSWAVERLLYLFGDDLLPC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0530 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 169 - -
Ssu6g0530 170 Pfam Ring finger domain 82 131 IPR001841 -
Ssu6g0530 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 135 IPR013083 -
Ssu6g0530 170 ProSiteProfiles Zinc finger RING-type profile. 84 131 IPR001841 -
Ssu6g0530 170 SMART ring_2 84 130 IPR001841 -
Ssu6g0530 170 SUPERFAMILY RING/U-box 77 137 - -
Ssu6g0530 170 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0530 Ssu-Chr6 8190284 8190796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0530 1 169 C3H Transcription Factor Family AT3G43430 45.977 1.64e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0530 K16281 - gmx:100306203 321.242