Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0527 ATGTCAACAGCAGAAGCTCCTTCTTTCCAAGAAGCAGCCCGATGCGTTGTCTGCAATTGCAATTTCAACGCATTCAGGAGAAGGCATCACTGCCGATCCTGTGGGAGAACATTGTGCAGTGAACATTCATCAAATCAAATGGCTTTACCACAATTTGGCATTTACTCAAATGTCCGAGTATGTGCTGATTGTTTCAACAACTCGTGGTCTGGGAAGGATGTACCACAGACTTCTTCAGATGGAGTAAACAGTGTGACAGAtacaatttctaaattaaatattaacacaAATGTTGATTCAAAATCCATACCAACTGCAGAGAATAAGCCTATATCAGGCATTAAAGAGTGTAAGTGTGGAATGCCACTTTGCATTTGTGAAGCTCCAGCCCCTTCCTCTGATGCACTCCCCCAACAGAAGAAACCCAATCCAGTTATTGCAGGTCCATCAAATCCTAAACCTAAGAAGACAGATACTGTTCCGAAAAATAGAAGCTCCAGTTCAGCTAGCAAATTTAGTTCTATGTTTAACGTTGGTCATGTAACTGATGGCACCTCAGACAGACCCCAGATTGATTATGAAGTTAATGGAGAGGGTTTAAGAGAAGCAATAAAAAATGGTGACACTGCTGCTGTTAAAAAACTTCTTAATGAGGGTGTGGATGCAAATTACAGGGACAAACAAGGACTGTCTTTATTACATTTGGCTGCAGTCTTCAATCAAACTGACATAGTTTTCATTCTCATGGATTCGGGGGCAAGCCTGGAGTACAAAAATGCACAAGGAGAAACACCTTTAGATTGTGCACCAGCTACATTGCAATACAAAATGCGAAAGAAGATGGAAGAAGGTGGAGCGATTGACCAAAGCCTTTGA 876 0.4075 MSTAEAPSFQEAARCVVCNCNFNAFRRRHHCRSCGRTLCSEHSSNQMALPQFGIYSNVRVCADCFNNSWSGKDVPQTSSDGVNSVTDTISKLNINTNVDSKSIPTAENKPISGIKECKCGMPLCICEAPAPSSDALPQQKKPNPVIAGPSNPKPKKTDTVPKNRSSSSASKFSSMFNVGHVTDGTSDRPQIDYEVNGEGLREAIKNGDTAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKMEEGGAIDQSL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0527 291 ProSiteProfiles Ankyrin repeat region circular profile. 228 259 - -
Ssu6g0527 291 SMART fyve_4 4 70 IPR000306 GO:0046872
Ssu6g0527 291 Pfam Ankyrin repeats (3 copies) 202 269 IPR002110 GO:0005515
Ssu6g0527 291 SMART ANK_2a 195 224 IPR002110 GO:0005515
Ssu6g0527 291 SMART ANK_2a 228 257 IPR002110 GO:0005515
Ssu6g0527 291 Gene3D - 182 276 IPR036770 -
Ssu6g0527 291 Pfam FYVE zinc finger 10 67 IPR000306 GO:0046872
Ssu6g0527 291 ProSiteProfiles Ankyrin repeat profile. 228 260 IPR002110 GO:0005515
Ssu6g0527 291 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 5 284 - -
Ssu6g0527 291 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 9 69 IPR017455 -
Ssu6g0527 291 CDD FYVE_scVPS27p_like 9 65 - -
Ssu6g0527 291 SUPERFAMILY Ankyrin repeat 200 271 IPR036770 -
Ssu6g0527 291 MobiDBLite consensus disorder prediction 133 171 - -
Ssu6g0527 291 SUPERFAMILY FYVE/PHD zinc finger 11 77 IPR011011 -
Ssu6g0527 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 70 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0527 207 286 MAP Kinase Kinase Kinase AT3G58760 35.000 7.97e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0527 - - gmx:100814367 538.11