Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0526 ATGGCTGGTGTGAACCCCGAGGCAGGAGGATGGAAGGCTTATCCTTCTGCTGCTGTTGATAGTGTTGATGGAAGGAGTAGTGATCACATGGAGGTCCACAACACCTTGAATGATGATGGGTCGGTGATGCATTTCTCTGCTACCCGGCCAGTGGCAGTGCTATCATCTGGACAGAATAAAGTGATTCCTAGTCCAACTCAGTTCAGCATCCTCTATAAGGGGAATATGTGTATCTATGAAGGAATTCCTGCAGAAAAGGTGCGTGAAATAATGTTGATTGCTTCTACCTCTGCTAAGTCTGCTGAAATGAAGAGTGGTATCCCCTTGACTTCACTCTTTCCCACAAGCCCTTCTTCTCCACAGGGAAATTCTACTAATTTGGCTTCACCTCAGTCGGTCTGTTTTCCTGCAAAGAAGAGTTCCATTTGCAGGCTGCAAGAATTCCCAATAGCACGCAGACAATCTCTTCAAAGGTTTCTTGAGAAGCGAGGAAAGAGGTTGGGTAATAAAGCCCCTTATGCCTTCTTAGCAACAAAAGCTGTTAACAACATAGACCATAATTTCTGTGCTGAGAAGACGCCAGATTTTGGTTCCTTGAACTATCACAGGCAGGGATTTCAGCCCCGTGTTGCTGCCTCTTTAAGGCAACTAGTGTTGGTTCTACTCTATGTGAAGTGGTACTTTCTGGAATAG 693 0.4545 MAGVNPEAGGWKAYPSAAVDSVDGRSSDHMEVHNTLNDDGSVMHFSATRPVAVLSSGQNKVIPSPTQFSILYKGNMCIYEGIPAEKVREIMLIASTSAKSAEMKSGIPLTSLFPTSPSSPQGNSTNLASPQSVCFPAKKSSICRLQEFPIARRQSLQRFLEKRGKRLGNKAPYAFLATKAVNNIDHNFCAEKTPDFGSLNYHRQGFQPRVAASLRQLVLVLLYVKWYFLE 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0526 230 Pfam Jas motif 149 173 IPR018467 -
Ssu6g0526 230 SMART tify_2 61 96 IPR010399 -
Ssu6g0526 230 Pfam tify domain 63 95 IPR010399 -
Ssu6g0526 230 ProSiteProfiles Tify domain profile. 61 96 IPR010399 -
Ssu6g0526 230 PANTHER DIVERGENT CCT MOTIF PROTEIN 1 191 - -
Ssu6g0526 230 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 191 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0526 Ssu-Chr6 8122656 8126084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0526 65 173 Tify Gene Family AT5G20900 44.144 1.87e-21 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu6g0526 tify 9.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0526 K13464 - gmx:100306655 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0526 6 8122656 8126084 Ssu1g1671 1 40641677 40645875 PCT