Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0523 ATGTTTTGGCTTCAAATCCTGTTAATAGAAGCACATATGGGAGGTTTAGCTAAGACAACTCATCTCATGACCCTGATGGTGGTAATAGGATTGTGCAGCCCTATTGTTGTTGCAGGCACCAAACATGTAAGCATCAAGAACAAACTAGGATCTGGGAAGAACATGACCTTGCATTGCCAGTCCAAAGACAATGATCTGGGCAAGCAAAACATAGAAGATGGGGATGAATTTGGCTGGGACTTGTCTGACAATGTTACTGGAACCACACTATTTTTCTGTGATTTGGAGTGGGAAAATGTTGACGAGTACCATTTTGATGCATATTCCTTTGCCAGGGACTGGGTACGATGTGATGCTGGATGTTCATGGCTAGCATCGGCTGAAGGGATTTATGGCTTAAATGGACAAACGGGGTACTGGGAATTCATATACCAATGGCCAAACTGA 447 0.434 MFWLQILLIEAHMGGLAKTTHLMTLMVVIGLCSPIVVAGTKHVSIKNKLGSGKNMTLHCQSKDNDLGKQNIEDGDEFGWDLSDNVTGTTLFFCDLEWENVDEYHFDAYSFARDWVRCDAGCSWLASAEGIYGLNGQTGYWEFIYQWPN 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0523 148 Pfam Plant self-incompatibility protein S1 42 146 IPR010264 -
Ssu6g0523 148 PANTHER - 28 131 IPR010264 -
Ssu6g0523 148 PANTHER PUMILIO HOMOLOG 15-LIKE 28 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0523 Ssu-Chr6 8073096 8073542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0523 43 146 Carbohydrate Esterase AT3G16970 32.407 1.32e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0523 - - gmx:102670225 238.81