Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0516 ATGCTGTTCCAACTACAGTTGGCAATGTACCAAAGAAGCAAGAGTGGTGGAGGCATGAAGCTGCTGAGGTTGTTCGTGTTTGTGGTGTTGGTGATTGTGAAATGGGTGGAAGGCTTTGAGAATGCTAATGTAACAGACATAGACATGCAGTATGTCAGTGGAAGAGGTTTCTACAACAGACCTTTGCTGGTTGGTCTTACTCTTATTAATGGTGCTGCTGCTAAAGGAGCTGTCTGCCTGGATGGATCTTTACCAGGTTACCACTTCCACCGCGGATATGGTTCAGGATCAAACAGTTGGCTCATACAATTGGAGGGAGGAGGCTGGTGTGGaactataaaaaattgtgaatacaGTAAGAAAACACGTCATGGTTCATCATTATTTATGGAAAAACAAATACCATTTATTGGGATATTGAGCAATAAAGCTGAGGAAAATCCAGattttttCAATTGGAATAGAATAAAAATCCGTTATTGTGACGGTGCATCATTTAGTGGGGACAGTCAAAATGAGAGAGCAGGGTTGTATTTCAGAGGGCAACGCATTTGGCAAGCTGCTATGGAAGATTTAATGTCAAAAGGGATGCGCTATGCCAAACAGgcTCTTCTATCTGGATGTTCTGCAGGAGGCTTAGCTTCTATTATACACTGTGATGAATTTCGGGAATTGTTTCCTAGAACCACAAGAGTAAAATGCTTAAGTGATGCTGGATTATTCCTTGATTCTGTTGATGTATCTGGCCATCGCAGCTTAAGGAATTTGTTCGGTAGTGTGGTCACCTTACAGGGAGTGCAAAAGATCCTTCCAAGGAGTTGCACCAGTCGCCTCGATCCAATTTTGTGCTATTTTCCTCAGCACTTAATTGCCAGTGTTAGGACACCACTGTTTCTTCTCAATGCAGCTTATGATATTTGGCAGATTCAAGCCAGTCTTGCTCCACCATCTGCTGACTACCATTGGAACTGGTTTGAATGCAGAAAAAATTATGCACGTTGCAATGCACCACAGATACACTTTCTTCAAGGTTTTCGAAATCTAATGCTTAGAGCTACAAGAGGCTTCTCAAGGTCTCATAAAAATGGGTTATTCATAAATTCATGTTTCGCTCATTGCCAATCAGAAAGACAGGATACCTGGTTTGCTCGTGATTCTCCTCGCATTGGAAATAGAGGGATCGCGGAGTCTGTTGGGAACTGGTTTTTTGACCGAGTTAGTGTCCAGGCTATCGGTTGTCCTTACCCTTGTGACAAAACCTGTCACAATTTGGTTTTTAAGTGA 1284 0.4174 MLFQLQLAMYQRSKSGGGMKLLRLFVFVVLVIVKWVEGFENANVTDIDMQYVSGRGFYNRPLLVGLTLINGAAAKGAVCLDGSLPGYHFHRGYGSGSNSWLIQLEGGGWCGTIKNCEYSKKTRHGSSLFMEKQIPFIGILSNKAEENPDFFNWNRIKIRYCDGASFSGDSQNERAGLYFRGQRIWQAAMEDLMSKGMRYAKQALLSGCSAGGLASIIHCDEFRELFPRTTRVKCLSDAGLFLDSVDVSGHRSLRNLFGSVVTLQGVQKILPRSCTSRLDPILCYFPQHLIASVRTPLFLLNAAYDIWQIQASLAPPSADYHWNWFECRKNYARCNAPQIHFLQGFRNLMLRATRGFSRSHKNGLFINSCFAHCQSERQDTWFARDSPRIGNRGIAESVGNWFFDRVSVQAIGCPYPCDKTCHNLVFK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0516 427 PANTHER NOTUM-RELATED 25 426 IPR004963 GO:0016787
Ssu6g0516 427 Pfam Pectinacetylesterase 62 406 IPR004963 GO:0016787
Ssu6g0516 427 PANTHER PECTIN ACETYLESTERASE 25 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0516 Ssu-Chr6 7991351 7997058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0516 24 427 Carbohydrate Esterase AT2G46930 61.425 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0516 K19882 - gmx:100791571 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0516 6 7991351 7997058 Ssu6g0516 6 7991351 7997058 ECH
Ssu6g0516 6 7991351 7997058 Ssu4g0508 4 8019469 8024862 ECH
Ssu6g0516 6 7991351 7997058 Ssu7g1850 7 37264949 37269210 ECH