Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0515 ATGTCTGACTTGGCTTTGCTTTTGCTTAtcactctctctccctctctctcttttcggTTTAAAGTAGCTTCtgttgtgtatatatataaagacccTAAGGTGGCGGCATTTCTTTTCAGTCTTGATCAGTTTCATTCATTGGAAGATATGGGAACATTAGAACAAATTGATGCTCCTCAAACCCAGTCATCATCATCCTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTAGGACACGACCACCCTCTTCCCCTTCATCAAGTGTCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATCTCTCCTTCTTCTCAGTCTGAATCAGCCTTCAATTCAACACCAAGTTATTTACCCTTCAGGGAGGAAACGTTTGACTGGCCACCAATTAAGTCCATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCTTTATTTGTGAAAGTCTACATGGAAGGCATCCCCATCGGAAGAAAATTAAATCTGTTGGCACATTGTAGCTATGATGGACTTGTGAAAACTCTTGGCCATATGTTTAGGACCACCATTCTCTGTCCTAACTCTCAACCACTTAATCCTGGGAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAGATGTTCTTGAACAGTGTGAAGAGGATGAAGATCACGAGAGCTGACAGATGctag 741 0.4035 MSDLALLLLITLSPSLSFRFKVASVVYIYKDPKVAAFLFSLDQFHSLEDMGTLEQIDAPQTQSSSSSSSSIDSNNHPSRTRPPSSPSSSVCRNRTDLSTDLRLGLSISPSSQSESAFNSTPSYLPFREETFDWPPIKSILRSTLVGKQSHLSQRPSLFVKVYMEGIPIGRKLNLLAHCSYDGLVKTLGHMFRTTILCPNSQPLNPGNFHVLTYEDQEGDWMMVGDVPWEMFLNSVKRMKITRADRC 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0515 246 Pfam AUX/IAA family 117 242 IPR033389 -
Ssu6g0515 246 MobiDBLite consensus disorder prediction 57 93 - -
Ssu6g0515 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 65 246 - -
Ssu6g0515 246 SUPERFAMILY CAD & PB1 domains 149 240 - -
Ssu6g0515 246 Gene3D - 150 246 - -
Ssu6g0515 246 ProSiteProfiles PB1 domain profile. 156 245 IPR000270 GO:0005515
Ssu6g0515 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 246 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0515 Ssu-Chr6 7976045 7977130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0515 159 246 B3 DNA Binding Superfamily AT2G46530 35.227 7.18e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu6g0515 AUX_IAA 1.7e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0515 K14484 - gmx:100527448 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0515 6 7976045 7977130 Ssu6g0515 6 7976045 7977130 ECH