Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0512 ATGGAAGGCAAAGTTGCATTGAAAAAATTGCTGGAAGTTCAGAAAAAGGCATATGATAATAGCACAGATGCACTGAACAGGACTGAGGAACCGTCCATTAAAAATACTCTAGGATCTACTCGTCTCAGTTTGAGTCTGAATAACTTGGAGCCCCCCCAAAATCAAGAGCAGCAGCCCCTGAACAAATTGGGCTTACTGCAAATTGAGCTAGAGGAGGTGAAGAAGGAGAATCAGAATTTAAGGTCTATGCTAAATGAGATCGCTGAACACTACGCTGCTCTTCAGAATCAGTTTTTGTTGGCGATACAGCAGAAGAAGCTATCTTCATCACCTCGAAATAATGAGGACATGCAGAAGGACAGCAGGCAATATGACATGAAGAAACCAGTTTTACCCTTATGGCAGTCCTTAAATACTGGTAAAATCAGTAACCAAGTAACATCACAAGCAAAAATCCTAGAAGATCAAGTATTTGAGGCTTCTCACAAGAAAGCTAGAGTGTCTGTAAGGACACGATCAGAATTATCTTTGATGGGTGATGGGTGTCAATGGAGAAAATATGGACAAAAGATAGCAAAGGGTAACCCTTGTCCCCGGGCCTACTATCGTTGCAACATGGGAACATCATGTCCAGTTCGCAAGCAGGTTCAAAGGTGTGCTGAGGATGAGAGTGTTGTCATCACAACCTATGAGGGGAATCATAATCATTCACTCCCACCAGCAGCCAGGTCCATGGCGTGCACAACATCAGCAGCACTGAACATGTACCTGTCTGGCTCAACCACTAGTTCACATGGCAGCACTTATTCAAATTCAGACCTCTTCTCTTCACTATCTACTTCTACCTACTATCCATCTGCATCATGTCCCACTGTAACATTGGACTTAACCCAGCCCTCTAAGACATTCCCAAGTGCAAGTGCTATTTCTTCAAACCATTGGCAACCTTTTCCTCTTTCAATGCATGGTTACCGTCAACAATCTGAGGGATTACCCTCAGAGAATAACCTTGCCTTGGTGGATATTGTTAGTGCTGCCATAACCAAGGATCCTTCTCTTAAGGCAGCATTAGATGCAGCCGTTTCCTCACTCATTGGAGACTCTCAGAACATCAATAACCACTGCCAACTTAGTACGAGTGATTATGACGCTTCTTCTATGATGTCTGCAGTAGTACAGCATCAGCTCTGCGCTACGGATCAATTGATTTAG 1212 0.4356 MEGKVALKKLLEVQKKAYDNSTDALNRTEEPSIKNTLGSTRLSLSLNNLEPPQNQEQQPLNKLGLLQIELEEVKKENQNLRSMLNEIAEHYAALQNQFLLAIQQKKLSSSPRNNEDMQKDSRQYDMKKPVLPLWQSLNTGKISNQVTSQAKILEDQVFEASHKKARVSVRTRSELSLMGDGCQWRKYGQKIAKGNPCPRAYYRCNMGTSCPVRKQVQRCAEDESVVITTYEGNHNHSLPPAARSMACTTSAALNMYLSGSTTSSHGSTYSNSDLFSSLSTSTYYPSASCPTVTLDLTQPSKTFPSASAISSNHWQPFPLSMHGYRQQSEGLPSENNLALVDIVSAAITKDPSLKAALDAAVSSLIGDSQNINNHCQLSTSDYDASSMMSAVVQHQLCATDQLI 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0512 403 Pfam WRKY DNA -binding domain 180 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0512 403 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 377 - -
Ssu6g0512 403 Coils Coil 63 97 - -
Ssu6g0512 403 SUPERFAMILY WRKY DNA-binding domain 170 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g0512 403 ProSiteProfiles WRKY domain profile. 173 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0512 403 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 377 IPR044810 GO:0003700
Ssu6g0512 403 SMART WRKY_cls 178 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0512 403 Gene3D WRKY domain 162 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0512 Ssu-Chr6 7891543 7899061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0512 150 365 WRKY Transcription Factor Family AT4G04450 48.963 1.32e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g0512 WRKY 5.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0512 - - gmx:100779314 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0512 6 7891543 7899061 Ssu2g1633 2 64931430 64933682 PCT
Ssu1g1682 1 40998527 41003890 Ssu6g0512 6 7891543 7899061 PCT