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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Ssu6g0508
ATGGAAGTAGAGGACTGGGATTTGAGCGCAGAGGACCTCGATTCTCTCGAAAGAGACGCTTTCCAGAAGATTGCTCAACTACGCAACCCTCCTTCTTCTCCGCACCAACGCCACCATTCTGCAACCAACCACGCCCCACCAAAACCCCTTCCCGATTCGCGTCCCCAAACTGTTGGTGCTTCATCTCAAGTAGCAAGAGCATTGCCCACGTCGTTGAAATCAGGGACAAACAACGAAAAACATTCAAAAGAGCTGCAAAAGTTTTCGGtcaaattttttcttcattccaGTGGATATGTTGCTGCGAAGTTTCAATATGACCAGGTAGTAGTTGCTGCTTTTCGTAGAATACCTAAATCTTCTTGGCATGCAAAAGAACGGTTATGGGTGTTCCCACTATCTTCCTTGTCAGAAGCAGGAAAGGTTCTTGGAGAAATATCTAGTTATAATGTTCAGgtGGAAAACTTGGATCCCTTAGTGCAACGTGCCATTGCTGCGGCCTCTGCAGTTCCAGATCTTCAAGATTGGTACCACAAAATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATACTGCAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACTTTGCAGGCCATTGCTGTAGCTTCATGCATTCAAGACTCGTGGCCTGTTCTCATACTTGCACCATCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAATGCCAAAAGCAGCATTAGTCTAGATGGACTATTCAACATTATCTCATACGATTTGGTGCCAAAGCTACAGAATATGCTTATAACATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTGTCTTCCTGTTATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCCGTCCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAGGAATGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGAATTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATGAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCAGTGAAGCGCAGGCAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCGCGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGCTGAATCACTcaagtttactcaaaagaatcTTATTAACAAGATATATACTGATTCTGCGGAAGCTAAGATTCCATCTGTTCTTGATTATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATAGATTCAATACACAAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGCATTGATGGAGGTACACCTGCTGCATCCAGGCAACAATTGGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCTGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTACTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGTTAGATGGCCATGAGAATGCCTTGGAGGTCTCAGCTAGTATGCCGGCGAATAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATGTGATAACATGGATAGGTTGGAACATGAGCCCAACCCCAAACGTCCCCGAAACTGA
2040
0.4167
MEVEDWDLSAEDLDSLERDAFQKIAQLRNPPSSPHQRHHSATNHAPPKPLPDSRPQTVGASSQVARALPTSLKSGTNNEKHSKELQKFSVKFFLHSSGYVAAKFQYDQVVVAAFRRIPKSSWHAKERLWVFPLSSLSEAGKVLGEISSYNVQVENLDPLVQRAIAAASAVPDLQDWYHKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQDSWPVLILAPSSLRLQWASMIQQWLNIPSSDILIVLPQSGGSNRGGFNIVSSNAKSSISLDGLFNIISYDLVPKLQNMLITCDFKVVIADESHFLKNAQAKRTTACLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGIFGLYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEMVKAKIKAAKSQEAESLKFTQKNLINKIYTDSAEAKIPSVLDYLGTVIEAGCKFLIFAHHQPMIDSIHKFLLKKKVGCIRIDGGTPAASRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENALEVSASMPANSPSKQKTLDQFVRRCDNMDRLEHEPNPKRPRN
679
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Ssu6g0508
679
MobiDBLite
consensus disorder prediction
22
64
-
-
Ssu6g0508
679
Pfam
Helicase conserved C-terminal domain
494
596
IPR001650
-
Ssu6g0508
679
ProSiteProfiles
HARP domain profile.
82
158
IPR010003
-
Ssu6g0508
679
ProSiteProfiles
Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
197
369
IPR014001
-
Ssu6g0508
679
PANTHER
DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER
4
663
-
-
Ssu6g0508
679
CDD
DEXHc_HARP_SMARCAL1
188
411
-
-
Ssu6g0508
679
Gene3D
-
159
436
IPR038718
-
Ssu6g0508
679
SMART
ultradead3
184
377
IPR014001
-
Ssu6g0508
679
ProSiteProfiles
Superfamilies 1 and 2 helicase C-terminal domain profile.
488
639
IPR001650
-
Ssu6g0508
679
Pfam
SNF2-related domain
206
465
IPR000330
GO:0005524|GO:0140658
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Ssu6g0508
Ssu-Chr6
7821078
7830216
Dispersed/Transposed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Ssu6g0508
493
637
RAD5 or RAD16-like Gene Family
AT1G11100
33.103
2.51e-16
81.6
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
SNF2
Ssu6g0508
SNF2_N
1.8e-27
CL0023
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Ssu6g0508
K14440
-
gmx:100797654
1224.15
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