Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0508 ATGGAAGTAGAGGACTGGGATTTGAGCGCAGAGGACCTCGATTCTCTCGAAAGAGACGCTTTCCAGAAGATTGCTCAACTACGCAACCCTCCTTCTTCTCCGCACCAACGCCACCATTCTGCAACCAACCACGCCCCACCAAAACCCCTTCCCGATTCGCGTCCCCAAACTGTTGGTGCTTCATCTCAAGTAGCAAGAGCATTGCCCACGTCGTTGAAATCAGGGACAAACAACGAAAAACATTCAAAAGAGCTGCAAAAGTTTTCGGtcaaattttttcttcattccaGTGGATATGTTGCTGCGAAGTTTCAATATGACCAGGTAGTAGTTGCTGCTTTTCGTAGAATACCTAAATCTTCTTGGCATGCAAAAGAACGGTTATGGGTGTTCCCACTATCTTCCTTGTCAGAAGCAGGAAAGGTTCTTGGAGAAATATCTAGTTATAATGTTCAGgtGGAAAACTTGGATCCCTTAGTGCAACGTGCCATTGCTGCGGCCTCTGCAGTTCCAGATCTTCAAGATTGGTACCACAAAATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATACTGCAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACTTTGCAGGCCATTGCTGTAGCTTCATGCATTCAAGACTCGTGGCCTGTTCTCATACTTGCACCATCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAATGCCAAAAGCAGCATTAGTCTAGATGGACTATTCAACATTATCTCATACGATTTGGTGCCAAAGCTACAGAATATGCTTATAACATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTGTCTTCCTGTTATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCCGTCCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAGGAATGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGAATTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATGAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCAGTGAAGCGCAGGCAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCGCGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGCTGAATCACTcaagtttactcaaaagaatcTTATTAACAAGATATATACTGATTCTGCGGAAGCTAAGATTCCATCTGTTCTTGATTATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATAGATTCAATACACAAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGCATTGATGGAGGTACACCTGCTGCATCCAGGCAACAATTGGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCTGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTACTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGTTAGATGGCCATGAGAATGCCTTGGAGGTCTCAGCTAGTATGCCGGCGAATAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATGTGATAACATGGATAGGTTGGAACATGAGCCCAACCCCAAACGTCCCCGAAACTGA 2040 0.4167 MEVEDWDLSAEDLDSLERDAFQKIAQLRNPPSSPHQRHHSATNHAPPKPLPDSRPQTVGASSQVARALPTSLKSGTNNEKHSKELQKFSVKFFLHSSGYVAAKFQYDQVVVAAFRRIPKSSWHAKERLWVFPLSSLSEAGKVLGEISSYNVQVENLDPLVQRAIAAASAVPDLQDWYHKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQDSWPVLILAPSSLRLQWASMIQQWLNIPSSDILIVLPQSGGSNRGGFNIVSSNAKSSISLDGLFNIISYDLVPKLQNMLITCDFKVVIADESHFLKNAQAKRTTACLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGIFGLYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEMVKAKIKAAKSQEAESLKFTQKNLINKIYTDSAEAKIPSVLDYLGTVIEAGCKFLIFAHHQPMIDSIHKFLLKKKVGCIRIDGGTPAASRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENALEVSASMPANSPSKQKTLDQFVRRCDNMDRLEHEPNPKRPRN 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0508 679 MobiDBLite consensus disorder prediction 22 64 - -
Ssu6g0508 679 Pfam Helicase conserved C-terminal domain 494 596 IPR001650 -
Ssu6g0508 679 ProSiteProfiles HARP domain profile. 82 158 IPR010003 -
Ssu6g0508 679 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 369 IPR014001 -
Ssu6g0508 679 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 663 - -
Ssu6g0508 679 CDD DEXHc_HARP_SMARCAL1 188 411 - -
Ssu6g0508 679 Gene3D - 159 436 IPR038718 -
Ssu6g0508 679 SMART ultradead3 184 377 IPR014001 -
Ssu6g0508 679 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 639 IPR001650 -
Ssu6g0508 679 Pfam SNF2-related domain 206 465 IPR000330 GO:0005524|GO:0140658
Ssu6g0508 679 SMART helicmild6 513 596 IPR001650 -
Ssu6g0508 679 Coils Coil 440 460 - -
Ssu6g0508 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 411 IPR027417 -
Ssu6g0508 679 CDD SF2_C_SNF 483 607 - -
Ssu6g0508 679 MobiDBLite consensus disorder prediction 26 40 - -
Ssu6g0508 679 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 663 IPR030101 GO:0006281|GO:0031297|GO:0036310
Ssu6g0508 679 Gene3D - 448 671 IPR027417 -
Ssu6g0508 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 639 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0508 Ssu-Chr6 7821078 7830216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0508 493 637 RAD5 or RAD16-like Gene Family AT1G11100 33.103 2.51e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu6g0508 SNF2_N 1.8e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0508 K14440 - gmx:100797654 1224.15