Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0505 ATGACACAATGGCCTCTTACAGAGAAAGGAGTCTTGCTTGGTGTTAAAGAACGGCAGCAACACATCCTCCATGGCAACATCATTCTCCTCGGCAACCTCCTTCCCAAGAATCGCATCCTTCATCATATCAGCCTCAATCTTGAGATCAAGCATGAGTTTTTCCCTCACTGCATTGATCCCCTCATCGGCAAGGAATCGCAGGTGGGTGAGATCGACAAATTGAATCCCTCCTTTGTCTTCGAGAACAACCACTTGAGAAATGCGTTCATAGTGTTGCAAGCGTGGAAGCAAGCCATTCTCTCCTATCAAAAAAACCTCACGAGAAATTGGGTGGGACCAAATGTTTGCAACTACACTTACATTTTTTGCTCTCTAACGCCGGATAATCCAAAGATCTACATTGTCACCAGAATCGATCTCAACCATGGTGACATTGCTGGATACCTCCCGAAGGAGCTTGGCTTGCTCACCGACTTCACGTTGTTCCACATCAACACTAACTTGCAGCACCATGCTGCACAAGTTTGA 528 0.4621 MTQWPLTEKGVLLGVKERQQHILHGNIILLGNLLPKNRILHHISLNLEIKHEFFPHCIDPLIGKESQVGEIDKLNPSFVFENNHLRNAFIVLQAWKQAILSYQKNLTRNWVGPNVCNYTYIFCSLTPDNPKIYIVTRIDLNHGDIAGYLPKELGLLTDFTLFHINTNLQHHAAQV 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0505 175 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 70 167 - -
Ssu6g0505 175 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 70 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0505 Ssu-Chr6 7801219 7802213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0505 69 167 Leucine-rich Repeat extension Gene Families AT3G24480 64.646 1.42e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0505 - - gmx:106799218 149.828