Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0504 ATGCCTATTACAGCTGATCTATTGAAAACCTCAGAAGGAGGGCCTGAAGTTCTTCTTCCAGCAGTATCACATTCACCTCCAGAAGTCTCATTCCTTCACCTTGCTTATCTTAACAAGCCTGAAATCCCAGTGTTAGTCCTAGGGATTCTAGCAGCCACAGTAACTGGGGCAATACTACCCATTATGGGGCTTCTTATCTCCAACatgataaatactttctttgagCCTGCAGATGAACTCCGTAAAGACTCAGAGTTTTGGGCATTAATATTTCTTGCCCTTGGTGTGGCTGGATCCATATTTCATCCATTAAGGTCCTACTTTTTTTCTGTAGCTGGTTCTAAGTTGATAAAAAGGATTCGGCTAATGtgttttgagaaaattattCACATGGAAGTAGGCTGGTTTGACAAAGCTGAGAATTCAAGTAGAGTACTTGGAGCAAGGCTGTCAATTGATATGCACTTGGTTTGCTGA 477 0.3962 MPITADLLKTSEGGPEVLLPAVSHSPPEVSFLHLAYLNKPEIPVLVLGILAATVTGAILPIMGLLISNMINTFFEPADELRKDSEFWALIFLALGVAGSIFHPLRSYFFSVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSRVLGARLSIDMHLVC 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0504 158 Gene3D ABC transporter type 1, transmembrane domain 18 157 IPR036640 GO:0005524|GO:0016021
Ssu6g0504 158 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 20 154 IPR039421 -
Ssu6g0504 158 Pfam ABC transporter transmembrane region 45 157 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g0504 158 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 46 158 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g0504 158 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 20 154 - -
Ssu6g0504 158 SUPERFAMILY ABC transporter transmembrane region 36 154 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0504 Ssu-Chr6 7794221 7794697 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0504 30 157 Calmodulin-binding Proteins AT2G36910 27.907 3.43e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0504 K05658 - gmx:100798707 258.455