Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0502 ATGATGAGCATTGCTTTTGCGAAGATGGCATCCCGAGGACAAGCAGCTTATTCTGAAGCAGCAACTGTAGTGGAGCGGACAATTGGTTCAATTCGAACTGTTGCATCATTTACGGGTGAGAAGCAAGCTATAGCTCAATACAATCAATACTTAACTAAAGCTTACAGAGTTGGAGTGCAAGAGGGTGTGGCAggtggttttggttttggtacagttcgtttatttatttactgCACTTATGGTTTGACAGTATGGTTTGGAGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGACAAGTCATTAGTGTATTTTTTGCAGTATTGACTGGTTCCATgTCTCTGGGGCAGGCATCTCCAAGCTTAACTGCATTTGCTGCAGGACAAGCTGCTGCCtttaaaatgtttgaaacaATAAAGAGGCAGCCAGATATTGATGCTTATGACACTGCTGGACGACAGCTAGATGATATTTCTGGAGATATAGAACTCAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCCGATGAACAGATATTCAATggattttcaatttcaatatcaAGTGGCACTACTGCAGCTTTGGTTGGGCAAAGTGGGAGTGGGAAATCAACAGTTATTGGTTTAATTGAAAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATTGACGGTATCAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAATTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGTAAGGATGGGGCAACAGATGAAGAAATCAGAGCTGCAGCTGAACTTGCTAATGCTGCTAAGTTCATAGATAAATTTCCCCATGGACTTGACACAATGGTTGGAGAGCATGGAACTCAGCTCTCTGGAGGTCAAAAACAAAGAATATCTATAGCAAGAGCAATTCTGAAGGACCCAAGAATTCTGCTCCTCGATGAAGCTACAAGTGCTCTTGATGCAGAATCAGAGAGAGTGGTGCAAGAGACACTAGACAGAATTATGATAAACCGAACAACTGTCATTGTAGCCCATCGCCTAAGCACGATAAGGAATGCTGATATCATTGCAGTTATTCATCAAggaaaagtaatagaaaaagGCACACATGCTGAACTCACTAAAGATCCTGATGGAGCTTTTAGCCAGCTCATTAGATTGCAAGAAATTAAAAGGGATTCAGAACAGCATGATGCAAATGACTCAGGCAGGCCAGAAAACCTTGTAGATTCTGAACGACAATTGAGCCAACGGTTTTCTTTCCCTCAATCTTTAAGCAGGGGATCATCTGGAAAAGGAAACAGCAGTCAGCACTCAATTAGAATATCAAATGCCATGCCTACCACACTAGATCTCTCAGAAACGTCAGAAGGAGGGCCTGAAGTTCTTCCTTCAGCAGCATCACATAAACCTCAAGAAGTTTCGCTTCTCCGCATTGCTTATCTTAACAAGCCTGAAATCCCAGTCTTACTCATGGGGACTCTAGCAGCAGCAGCAACTGGGGCAATACTACCGACCGTGGGGCTTCTTCTCTCCCACGtgataaatactttctttgagCCTGCAGATGAACTGCGTAAAGACTCAAAATTTTGGGCATTAATATTCGTTGCCCTTAGTGTGGCTGCCTTCATATTTCTTCCATTAAGGTCCTACTTTTTTGCTGTAGCTGGTTCTAAGTTGATCAAAAGGATCCGGCTAATgtgttttgagaaaataattcaCATGGAAATAGGCTGGTTTGATAAAGCTGAGAATTCAAGTGGAGCACTTGGAGCTAGGCTTTCAACTGATGCGGCTTCTATTCGAACTTTGGTTGGGGATGCTCTTGGTTTGCTGGTTCAAGATATTGCTACAGCAATTACAGCCTTGGTAATTGCCTTTGAGGCCAACTGGCAGCTTTCTCTCATCGTTCTTGTTTTGGTACCTCTTGTATTACTAAATGGACATGCGCAAATGAAGTCCATGCAAGGATTCAGCACGGATGCAAAGAAACTATATGAGGAAGCAAGTCAGGTAGTGAATGATGCAGTAGGGAATATCAGAACACTTGCTGCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTGTAGGACCAATTCAGACGGGTATAAGGCAAGGTTTAGTCAGCGGAACAGGTTTTGGGTTATCACTCTTCTTTCTGTTCTCTGTTTATGCATGCAGTTTTTATGCTGGGGCCAGACTTGTTGAGAATGGCAAAACATCAATGTCAGATGTTTTTCGTGTATTTTTTTCCCTCACAATGGCAGCTGTAGCAATGTCACAATCTGGCTTCATGACCCCAGCTGCAAGTAAAGCAAAAAGTTCTGCTGCTTCTGTATTTGCTATTCTTGATCAGAAATCAAGAATAGACCCCAGTGATGAGTCTGGAATGATGTTGCAAGAAGTGAAGGGAGAGATTGAGTTCCATCATGTCACTTTCAAGTATCCAACCAGGCCTAATGTTCTTGTATTCAAAGATCTTTCCTTGATCATTCATGCAGGAGAGACAGTTGCTCTAGTAGGTGAAAGTGGAAGTGGAAAGTCAACAGTGATCTCATTGTTACAAAGATTTTATGACCCAGATGCGGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGCCTGGTAAGCCAGGAGCCTATGCTGTTTAACGACACCATCCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCCCACCAGTTCATTAGCAGTTTGCAGCAGGGTTATGATACATTAGTAGGGGAGAGAGGGATTCAGCTATCTGGGGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATATTGCTACTAGATGAAGCCACCAGTGCACTTGATGCCGAGTCTGAAAGAGTGGTTCAGGATGCACTTGACCGGGTGAGGGTGGATAGAACCACAATAGTGGTGGCTCACAGGTTATCCACCATAAAAGATGCAGATTCAATTGCAGTGGTTAAAAATGGAGTCATTGCAGAGAAAGGAAAGCACGACACTTTGCTAAACAAAGGTGGTACATATGCTTCCTTGGTAGCACTGCACATTAGTGCTTCTTCATCATAG 3207 0.4153 MMSIAFAKMASRGQAAYSEAATVVERTIGSIRTVASFTGEKQAIAQYNQYLTKAYRVGVQEGVAGGFGFGTVRLFIYCTYGLTVWFGGKMVLEKGYTGGQVISVFFAVLTGSMSLGQASPSLTAFAAGQAAAFKMFETIKRQPDIDAYDTAGRQLDDISGDIELREVCFSYPSRPDEQIFNGFSISISSGTTAALVGQSGSGKSTVIGLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPILFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKFPHGLDTMVGEHGTQLSGGQKQRISIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLSTIRNADIIAVIHQGKVIEKGTHAELTKDPDGAFSQLIRLQEIKRDSEQHDANDSGRPENLVDSERQLSQRFSFPQSLSRGSSGKGNSSQHSIRISNAMPTTLDLSETSEGGPEVLPSAASHKPQEVSLLRIAYLNKPEIPVLLMGTLAAAATGAILPTVGLLLSHVINTFFEPADELRKDSKFWALIFVALSVAAFIFLPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEIGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATAITALVIAFEANWQLSLIVLVLVPLVLLNGHAQMKSMQGFSTDAKKLYEEASQVVNDAVGNIRTLAAFCAEEKVMELYQKKCVGPIQTGIRQGLVSGTGFGLSLFFLFSVYACSFYAGARLVENGKTSMSDVFRVFFSLTMAAVAMSQSGFMTPAASKAKSSAASVFAILDQKSRIDPSDESGMMLQEVKGEIEFHHVTFKYPTRPNVLVFKDLSLIIHAGETVALVGESGSGKSTVISLLQRFYDPDAGQITLDGTEIQKLQLKWFRQQMGLVSQEPMLFNDTIRANIAYGKGGDATEAEIIAAAELANAHQFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDRTTIVVAHRLSTIKDADSIAVVKNGVIAEKGKHDTLLNKGGTYASLVALHISASSS 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0502 1068 Pfam ABC transporter transmembrane region 8 113 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g0502 1068 Pfam ABC transporter transmembrane region 502 774 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g0502 1068 Pfam ABC transporter 843 992 IPR003439 GO:0005524
Ssu6g0502 1068 Gene3D ABC transporter type 1, transmembrane domain 4 409 IPR036640 GO:0005524|GO:0016021
Ssu6g0502 1068 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 162 398 IPR003439 GO:0005524
Ssu6g0502 1068 Gene3D - 152 401 IPR027417 -
Ssu6g0502 1068 Gene3D - 814 1062 IPR027417 -
Ssu6g0502 1068 CDD ABC_MTABC3_MDL1_MDL2 162 400 - -
Ssu6g0502 1068 CDD ABC_MTABC3_MDL1_MDL2 824 1059 - -
Ssu6g0502 1068 ProSitePatterns ABC transporters family signature. 301 315 IPR017871 GO:0005524
Ssu6g0502 1068 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 503 789 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g0502 1068 Pfam ABC transporter 181 329 IPR003439 GO:0005524
Ssu6g0502 1068 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 1 1065 - -
Ssu6g0502 1068 SUPERFAMILY ABC transporter transmembrane region 5 146 IPR036640 GO:0005524|GO:0016021
Ssu6g0502 1068 ProSitePatterns ABC transporters family signature. 964 978 IPR017871 GO:0005524
Ssu6g0502 1068 Gene3D ABC transporter type 1, transmembrane domain 720 813 IPR036640 GO:0005524|GO:0016021
Ssu6g0502 1068 CDD ABC_6TM_Pgp_ABCB1_D2_like 492 807 - -
Ssu6g0502 1068 Gene3D ABC transporter type 1, transmembrane domain 433 623 IPR036640 GO:0005524|GO:0016021
Ssu6g0502 1068 MobiDBLite consensus disorder prediction 431 467 - -
Ssu6g0502 1068 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 824 1061 IPR003439 GO:0005524
Ssu6g0502 1068 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 127 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g0502 1068 SUPERFAMILY ABC transporter transmembrane region 491 808 IPR036640 GO:0005524|GO:0016021
Ssu6g0502 1068 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 1065 IPR039421 -
Ssu6g0502 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 813 1061 IPR027417 -
Ssu6g0502 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 400 IPR027417 -
Ssu6g0502 1068 MobiDBLite consensus disorder prediction 431 479 - -
Ssu6g0502 1068 SMART AAA_5 851 1044 IPR003593 -
Ssu6g0502 1068 SMART AAA_5 189 361 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0502 Ssu-Chr6 7761959 7766448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0502 470 1065 Calmodulin-binding Proteins AT2G36910 37.562 3.99e-124 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0502 K05658 - gmx:100777713 1829.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0502 6 7761959 7766448 Ssu6g0502 6 7761959 7766448 ECH