Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0501 ATGCGTAACCACCACAAGGGAAACAACTTGACAGTGAGGGATTTGGAAACGgttagagagggagagagagtgGTGTGGCAGAACATGCTGGGAACGAGTTTTTTTCGGTTTACAGTCATTGGTAGAGGGGCTTGTGAGCATAAGGAGTCTTCCTCCATTAAAATGGAAGGGGATATCAGTGTAAACGGAGATCCTAACAACAACAAAGACTCAAAGAAGAGCGAGGCCAAAGATGAACCCGCCAAAACTGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCCTTGGATCACTTGTTGATGTTTGTGGGGACTGTGGGTGCCATTGGGAATGGAATCTCCATGCCCTTGATGACTTTGATATTTGGAAATATGATCAATGCATTTGGAGGATCCAGTAACACCAACGAAGTTGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTGTGGGTACCTTTTTTGCGTCACTTTTGCAGTTGACAAGCTGGATGATCACTGGGGAGAGACAAGCTGCAAGAATTAGAGGGTTATACCTTCAAACAATTTTGAGGCAAGATGTCAGCTTCTTTGATAAGGAGACTAATACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATACAGTTAATGGCAACTTTCTTTGGAGGTTTTGTCATAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGTTATCTTGTATTCCACTTCTTGTCTTGTCTGGGGCTATGATGAGCCTGATTATCACAAAAGCATCATCCAAAGGACAAGCTGCTTATTCTACAGCAGCAAGTGTAGTAGAGCAGACAATTGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAGGCTAGCTATTGCTAAATACAATCGGTCCTTAATCAAGGCGTACATGATTGGAGTGCAGGAGGCACTTGCTTCTGGTCTGGGTTTTGGTGCACTCTACTTTGTTGTTATCTGCAGTTATGGTTTGGCCATATGGTTTGGTGCGAAAATGATAATAGAGAAAGGATATACAGGAGGAGAGGTTGTGACTGTAATATTTGCTGTGTTGACTGGCTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCAGCAGGACAAGCTGCAGCCTATAAGATGTTTGAAACAATCAAAAGGAAGCCAGAAATCGATGCTTATGACATGACGGGTCAGAAGCTTGATGACATTCGTGGTGATATAGAGCTTAGGGAGGTTTTCTTTAGTTATCCTACAAGACCTGATGAACTGATATTCAATggattttctctttcaataCCAAGTGGCACTACTGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAATCTGGTGCAGTACTCATTGATGGTATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATTGGCCTAGTCGGCCAGGAACCAGTTCTCTTCACTTGTAGCATTAAAGAGAATATTGCCTATGGCAAGGATGGTGCAACTGATGAAGAAATCAGAGCTGCAGCTGAACTTGCTAATGCTGCTAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGGGAGCATGGTACTCAGCTCTCTGGGGGTCAAAAGCAGAGAGTAGCAATAGCAAGAGCAATTTTGAAAGATCCCAGGATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGGATTGTACAAGAGGCATTAGACAGAATAATGATAAACAGAACAACTGTCATTGTAGCTCACCGCTTAAGTACCATAAGAAATGCTGATACCATTGCTGTTATTCATCaaggaaaaatagttgaaagagGTTCACATGATGACCTCACCAAGGATCGTGATGGAGCCTATAGCCAGCTCATCAGACTACAAGAAATTAAGAGATCAGAAAAGAATGTAGAAGACAGAGACAAAGCAGAGAGTATAGTGCATTCTGGAAGACATTCAAGTCAAAGGTCCTCTTTCTTACGATCTATAAGCCAAGAGTCACTGGGAGTTGGAAACAGTGGTCGTCATTCATTCTCTGCGTCATTTGGTGTGCCCACATCTGTTGGCTTCATAGAACCTGCGGGTGGAGGGCCTCAAGATCCTCCTTCAACAGCTCCTTCACCACCTGAAGTGCCTCTTTATCGCCTGGCTTATCTAAACAAGCCAGAGATTCCAGTGTTACTGATGGGGACTATAGCTGCAGTGATATCTGGAGTAATATTACCTGTTTTTGGGCTCTTGCTTTCTAAAATGATAAGTATTTTCTATGAGCCAGCTCATGAACTTCGTAAAGATTCAAAAGTTTGGGCATTAGTATTTGTTGCACTTGGTGTGGTATCATTGCTGGTTTATCCAGCTAGATTCTACCTTTTTGGTGTTGCTGGTGGTAAGTTGATCAAAAGGATCCGGGAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGATGAATCTGAACATTCAAGTGGGGCAATTGGAGCAAGGCTCTCTACTGATGCAGCTTCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCCACAGCAGTAGCTGGCTTGGTAATTGCCTTTGAATCAAGCTGGCAGCTTGCTCTTATAATCCTTGCTTTGGTGCCTCTACTAGGAGTAAATGGATATGTGCAATTCAAGTTTTTGAAAGGATTCAGTGCAGATGCAAAGAAATTGTACGAGGAAGCCAGTCAAGTGGCGAATGATGCTGTGGGGAGTATAAGAACGGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCAATTAAGACAGGCATAAGGCGAGGGATAATAAGTGGAATTAGTTTTGGGCTATCATTCTTCGTGCTGTATGCAGTTTATGCAACCAGTTTTTATGCTGGAGCTCGACTGGTAGAGGATGGCAAATCATCATTCTCTGATGTTTTCCGTGTCTTTTTCGCTCTCAGTATGGCAGCTGTAGGAATCTCTCAATCTGGCTCTTTGGTTCCTGATTCAACTAGAGCAAAAGGTGCTGCTGCTTCCATATTTGCTATTCTTGACCGAAAGTCACAAATAGACCCCAGTGATGACTCTGGAATGACATTGGAAGAAGTCAAGGGAGAAATTGAGCTTAAGCATGTCAGTTTCAAGTATCCTACCAGACCTGATGCTCAAATATTCAGAGATCTTAGCTTGACCATTCGTAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGTTACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTAGATGGAAAAGAAATCCAGAGGATGCAAGTTAAGTGGCTGAGACAACAAATGGGCCTGGTGAGCCAAGAGCCTGTGTTGTTTAATGACACCATCCGGGCCAATATTGCATATGGAAAAGGAGATGCAACTGAGGCAGAAATTATAGCTGCAGCTGAATTGGCAAACGCTCATAAGTTCATTAGTAGTTTGCAGAAGGGTTATGACACAGTAGTAGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCACGAGCTATAGTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTCCAGGATGCACTAGACCGTGTTATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGTTATCAACTATTAAGGGTGCGGATTTAATTGCAGTAGTTAAAAATGGGGTTATAGCAGAGAAGGGAAAGCATGAAGCATTACTCAACAAGGGAGGTGACTATGCTTCCTTAGTAGCATTGCACACAACTGCTTCTACATCTTAG 3981 0.424 MRNHHKGNNLTVRDLETVREGERVVWQNMLGTSFFRFTVIGRGACEHKESSSIKMEGDISVNGDPNNNKDSKKSEAKDEPAKTVPLYKLFSFADPLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGGSSNTNEVVDEVSKVSLKFVYLAVGTFFASLLQLTSWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLMATFFGGFVIAFIKGWLLTVVMLSCIPLLVLSGAMMSLIITKASSKGQAAYSTAASVVEQTIGSIRTVASFTGERLAIAKYNRSLIKAYMIGVQEALASGLGFGALYFVVICSYGLAIWFGAKMIIEKGYTGGEVVTVIFAVLTGSMSLGQASPSLSAFAAGQAAAYKMFETIKRKPEIDAYDMTGQKLDDIRGDIELREVFFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGAVLIDGINLREFQLKWIRQKIGLVGQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHDDLTKDRDGAYSQLIRLQEIKRSEKNVEDRDKAESIVHSGRHSSQRSSFLRSISQESLGVGNSGRHSFSASFGVPTSVGFIEPAGGGPQDPPSTAPSPPEVPLYRLAYLNKPEIPVLLMGTIAAVISGVILPVFGLLLSKMISIFYEPAHELRKDSKVWALVFVALGVVSLLVYPARFYLFGVAGGKLIKRIREMCFEKVVHMEVSWFDESEHSSGAIGARLSTDAASVRALVGDALGLLVQNIATAVAGLVIAFESSWQLALIILALVPLLGVNGYVQFKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPIKTGIRRGIISGISFGLSFFVLYAVYATSFYAGARLVEDGKSSFSDVFRVFFALSMAAVGISQSGSLVPDSTRAKGAAASIFAILDRKSQIDPSDDSGMTLEEVKGEIELKHVSFKYPTRPDAQIFRDLSLTIRSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQRMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGDATEAEIIAAAELANAHKFISSLQKGYDTVVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLNKGGDYASLVALHTTASTS 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0501 1326 Gene3D - 1073 1325 IPR027417 -
Ssu6g0501 1326 Pfam ABC transporter 443 591 IPR003439 GO:0005524
Ssu6g0501 1326 CDD ABC_6TM_Pgp_ABCB1_D1_like 101 385 - -
Ssu6g0501 1326 SMART AAA_5 451 637 IPR003593 -
Ssu6g0501 1326 SMART AAA_5 1110 1302 IPR003593 -
Ssu6g0501 1326 CDD ABC_MTABC3_MDL1_MDL2 1083 1317 - -
Ssu6g0501 1326 PANTHER - 60 1322 - -
Ssu6g0501 1326 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 102 389 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g0501 1326 Gene3D ABC transporter type 1, transmembrane domain 147 1050 IPR036640 GO:0005524|GO:0016021
Ssu6g0501 1326 Gene3D - 422 675 IPR027417 -
Ssu6g0501 1326 Pfam ABC transporter 1102 1250 IPR003439 GO:0005524
Ssu6g0501 1326 SUPERFAMILY ABC transporter transmembrane region 749 1067 IPR036640 GO:0005524|GO:0016021
Ssu6g0501 1326 Pfam ABC transporter transmembrane region 101 375 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g0501 1326 Pfam ABC transporter transmembrane region 761 1032 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g0501 1326 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 60 1322 - -
Ssu6g0501 1326 MobiDBLite consensus disorder prediction 55 79 - -
Ssu6g0501 1326 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 424 660 IPR003439 GO:0005524
Ssu6g0501 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 662 IPR027417 -
Ssu6g0501 1326 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 762 1048 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g0501 1326 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1083 1319 IPR003439 GO:0005524
Ssu6g0501 1326 CDD ABC_MTABC3_MDL1_MDL2 424 662 - -
Ssu6g0501 1326 ProSitePatterns ABC transporters family signature. 1222 1236 IPR017871 GO:0005524
Ssu6g0501 1326 ProSitePatterns ABC transporters family signature. 563 577 IPR017871 GO:0005524
Ssu6g0501 1326 CDD ABC_6TM_Pgp_ABCB1_D2_like 751 1066 - -
Ssu6g0501 1326 SUPERFAMILY ABC transporter transmembrane region 82 408 IPR036640 GO:0005524|GO:0016021
Ssu6g0501 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1072 1319 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0501 Ssu-Chr6 7715175 7751979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0501 75 1325 Calmodulin-binding Proteins AT2G36910 45.642 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0501 K05658 - gmx:100800293 2246.47