Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0489 ATGGCATCTGATCTAAGTTCGGGGTTGTCCAAACAAACGTCTGTTTTTGGGTTGCAAGCATGGGAATTAATGGGGATAATAGTTGGGTTGTTCATTATAATCATTCTTGTGGTGTTATCAATATGTCTTACTTCAAGAAAGAAATCTAGAAGAGTCAATGGCATGCTTCCCCTTAGCCGTATGTTATCTGTTTCTGAAGAGATCAAGGAAATTAGAGTTGATCAAGTATCAGCCAATAATCATCCTCAAAACGGTGCCTTTATGAGTCTGTATGACAGGTTTAGTGACAGGGACTCTGAAAAGGTTCTGATCCAAACAAAGAATGGGGAAAATAGCAGTCAATCAGGCTCATTTGTTTATCTTAAGAAAGATGATGGTGGCTCTCAATCAGGTGAAGAAAGTGGTGCTAAGTCTGTTTCTACTTATAGGTCTTCTTCGCACCCTATAACTGCACCATCCCCGTTGTCTGGTCTGCCTGAATTCTCTCACCTTGGGTGGGGACACTGGTTTACATTAAGGGACCTAGAACTTGCAACAAACAGATTTTCAAAAGACAATGTTATTGGTGAAGGTGGATACGGAGTTGTTTATCAAGGCCAGCTAATCAATGGGAATCCTGTGGCTGTTAAGAAGCTACTCAATAATCTAGGTCAAGCTGAAAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGCCATGTGCGACACAAGAATTTGGTTAGACTTTTAGGCTATTGCATTGAAGGCACTCACAGGTTGTTGGTTTACGAGTATGTTAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCCATGCGGCAGTATGGCTTTCTTACTTGGGATGCCCGGATTAAAATTCTTCTCGGAACAGCTAAAGCGCTGGCTTACTTGCATGAGGCAATTGAGCCAAAAGTTGTACATCGAGATATTAAGTCAAGCAATATTCTAATTGATGATGATTTCAATGCCAAAATATCTGACTTTGGGCTGGCTAAGTTACTGGGTGCTGGAAAAAGTCATATCACAACTCGAGTAATGGGTACCTTTGGATATGTGGCTCCAGAATATGCCAATTCTGGTTTACTCAACGAGAAGAGTGATGTTTATAGCTTTGGGGTATTGCTCCTCGAAGCAGTTACTGGAAGAGACCCAGTGGATTATAGCCGCCCAGCAGCTGAGGTAAATTTGGTTGACTGGCTCAAGATGATGGTTGGGAATAGGCGAGCAGAAGAGGTGGTGGACCCTAACATTGAGACCTAG 1257 0.4216 MASDLSSGLSKQTSVFGLQAWELMGIIVGLFIIIILVVLSICLTSRKKSRRVNGMLPLSRMLSVSEEIKEIRVDQVSANNHPQNGAFMSLYDRFSDRDSEKVLIQTKNGENSSQSGSFVYLKKDDGGSQSGEESGAKSVSTYRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYQGQLINGNPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAVTGRDPVDYSRPAAEVNLVDWLKMMVGNRRAEEVVDPNIET 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0489 418 MobiDBLite consensus disorder prediction 131 151 - -
Ssu6g0489 418 Gene3D Transferase(Phosphotransferase) domain 1 258 418 - -
Ssu6g0489 418 SUPERFAMILY Protein kinase-like (PK-like) 156 413 IPR011009 -
Ssu6g0489 418 ProSiteProfiles Protein kinase domain profile. 182 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0489 418 CDD STKc_IRAK 188 416 - -
Ssu6g0489 418 SMART serkin_6 182 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0489 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Ssu6g0489 418 PANTHER OS01G0323000 PROTEIN 2 418 - -
Ssu6g0489 418 MobiDBLite consensus disorder prediction 124 151 - -
Ssu6g0489 418 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Ssu6g0489 418 Pfam Protein kinase domain 183 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0489 418 PANTHER RECEPTOR-LIKE KINASE PLANT 2 418 - -
Ssu6g0489 418 Gene3D Phosphorylase Kinase; domain 1 163 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0489 Ssu-Chr6 7582624 7585071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0489 17 403 Trihelix Transcription Factor Family AT1G70460 40.712 2.35e-86 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Ssu6g0489 Pkinase 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0489 - - gmx:100793499 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0489 6 7582624 7585071 Ssu6g0489 6 7582624 7585071 ECH
Ssu6g0489 6 7582624 7585071 Ssu1g1692 1 41387119 41390891 PCT