Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0486 ATGGGTTGCTTTGGCTTCTGCAAAGGGGACGATAGTATTACACCACCTGACAGAGGACCTTTCATGCAAAGCACTCCCACTGGGAACGCCAGTCATCATGCAAGACACACACCAGTAACCGCTCCTCGGACTATAAATTTTCAACCTATTGCTGTCCCTTCCATTACAGTAGATGAATTGAAGTCTTTGACAGATAATTTTGGCTCAAAACCTTTCATTGGTGAGGGTGCATATGGAAAGGTATATCATGCCACATTGAAAAATGGGCGTGAAGTGGTAATCAAAAAGTTAGATTCCAGTAATCAGCTGGAGCAAGAATTTCTTTCTCAGGTCTCCATCGTATCAAGGCTAAAGCATGAAAACGTTGTTGAGCTTGTTAACTATTGCGTTGATGGTCCTTTCCGTGCCCTTGCCTATGAGTATGCTCCTAAAGGGTCCCTTCATGATATTCTACATGGACGCAAAGGTGTGAAGGGTGCACAACCTGGTCCAGTTCTCTCATGGGCTCAGAGAGTTAAAATTGCTGTTGGAGCAGCCAGGGGACTTGAATATCTTCATGAAAAGGCAGAGATTCATATCATCCATCGTTACATTAAGTCTAGTAACATActtctttttgatgatgatgttgcaAAGATTGCCGATTTTGATTTGTCAAATCAAGCCCCTGATGCAGCAGCACGTCTTCATTCTACCCGTGTTCTAGGGACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGACAACTCACTTCAAAAAGTGATGTTTATAGCTTTGGGGTTATACTGCTGGAACTCTTAACTGGGCGCAAACCAGTTGATCATACACTGCCTCGAGGACAGCAAAGCCTCGTGACCTGGGCAACACCAAAGCTTAGTGAAGATAAGGTGAAGCTGTGTGTTGATGTTAGACTAAAGGGAGAGTACCCTTCAAAGTCAGTTGCAAAGATGGCTGCTGTTGCTGCACTCTGTGTGCAATATGAAGCTGAGTTTCGGCCAAATATGAGCATTATAGTCAAAGCTCTACAGCCTCTCCTGAATACTCGTTCTGTTCACTCAAAGGAATCACCCAAAGTGTAA 1083 0.4303 MGCFGFCKGDDSITPPDRGPFMQSTPTGNASHHARHTPVTAPRTINFQPIAVPSITVDELKSLTDNFGSKPFIGEGAYGKVYHATLKNGREVVIKKLDSSNQLEQEFLSQVSIVSRLKHENVVELVNYCVDGPFRALAYEYAPKGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAEIHIIHRYIKSSNILLFDDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKLCVDVRLKGEYPSKSVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLLNTRSVHSKESPKV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0486 360 MobiDBLite consensus disorder prediction 15 35 - -
Ssu6g0486 360 SUPERFAMILY Protein kinase-like (PK-like) 43 343 IPR011009 -
Ssu6g0486 360 CDD STKc_IRAK 73 346 - -
Ssu6g0486 360 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0486 360 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Ssu6g0486 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 355 - -
Ssu6g0486 360 Gene3D Phosphorylase Kinase; domain 1 29 141 - -
Ssu6g0486 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 355 - -
Ssu6g0486 360 Pfam Protein tyrosine and serine/threonine kinase 73 343 IPR001245 GO:0004672|GO:0006468
Ssu6g0486 360 Gene3D Transferase(Phosphotransferase) domain 1 143 359 - -
Ssu6g0486 360 PIRSF ILK 31 357 - -
Ssu6g0486 360 MobiDBLite consensus disorder prediction 18 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0486 Ssu-Chr6 7570736 7573306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0486 48 349 Receptor kinase-like Gene Family AT4G02010 47.468 1.00e-85 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Ssu6g0486 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0486 K13436 - gmx:547596 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0486 6 7570736 7573306 Ssu6g0486 6 7570736 7573306 ECH