Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0485 atgGAGGCTGAGTTTGGGGGGAAGAATCAGTACTTGTATGGACCTGTGGTGTCAGGAATGAAGAAAGCTGTTGGGAATGGGAAGGGGAATTTGGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACTGCTCAATCACTCAATTCAGTGCCATCAGATTGTAGGAGTCGCCAGTTTTTCCCACCTCATCCTGAAATGCCTGCAAAAAATGCTAATCCATCTACCGATTTGTCTTCTTCTATATTCTACTCAGGTGAAGGAAAGAGGGAATTGGAGAAGAGAAGGAGGGGTGTTATAGTTGAAGAAGGTGAAGGGGAGGGGCTGAATGATGAGGGTGGTTCTCTTAGTTTGAACCTTGGGGGTCATGGTTACCCTCTCATGGTGGAAGGAGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGGGACTACTACGACTGCTACTACCACCTCTAACCGTGCTATTTGTCAGGTGCAAGATTGTAGGGCTGATCTTAGTAATGCCAAGGATTACCACCGTCGGCACAAGGTTTGTGAAGTTCACTCTAAGGCCGCTATGGCACTAGTGGGAAATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCACAATAGGAGGAGAAGGAAAACTCATCCTGATGTTACTGTTGTTAATGAAGGCTCTCTGAATGATGAAAGGGGCAGTAACTATCTGTTAATGAGTCTGTTACGGATACTGACCAATTTACATTCAAATGGCTCAGATCATACAAGGAACCAGGATATTCTCTCTCATCTGCTGAGGAACCTGGCAAGTCTGGCTGGTCCAATTAATGGTAGAAGTTTAGCATCCTTATTGGAGGAATCTAAAGGTTTGGTAAATGCTGGGACACCTGGAGCTGCTCATGATAAAACCAACCTTAATTCAAATGGTCCGGAAACTTCCAGGCCTTCTGGTTCTTCCATCAAGACCAATAATGGCTTCATCAGTCAGGACCCTCCAATATCTATGGCACAGTGTGAAACAGTGCATGCTAATGGTAGGACACAAAAATGTATACCTTCAGCTGATGGTGGAGTAAGAAATTTAAAACCTCCTTCAGGAGCACTGCTCTCAAGTGCAAGTCAATCAAGGGACAGCCTTCCATCCCAATTAACTGCAGCAGAGACTACAGTTGGAAGGGACAGCTTAAATAACATTGACCTGAATAATGTGTACAATGACATACAGAATACTGTTGAGAATCCTAAGAAGCCTTGTCCTTCTGTGGCTTCAAAGATGGTGTCTATTGATCATCCCTCATGGTTGCAATGTGATTCTCTCAAATCTCGTCCTCCACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAATCACCATCTAGTTCCAGTGGAGAAGCCCAGAGTTGCACAGATCGAATTGTTTTTAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTCTTCTCCGATCACAGATCCTCAACTGGTTATCCCATAGTCCCACAGAGATAGAGAGCTACATAAGGCCAGGCTGTATCATATTAACGATATATCTCTGTCTTGAAAAATCTGCATGGGAGGAGCTCTACTGTAATCTAGGATCCAGCTTGAGAAAGCTTCTTGATGCATCAAATGATTCATTTTGGAGAACAGGATGGGTATATGCAAGGATGCAGCACTCTGTAGCTTTTCTATATAATGGTCAGGTAGTCTTAGATATGCCATTGTGTATCAAAAGCCCACAACATTGTAGGATTTCATGCATTAAACCACTTGCCGTTCCTGCAAATGCTAGTGCTCAATTTATTGTGAAAGGTTTCAACCTTTCCCAGTCTAGCACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACATAATAGTTGTCATGATTTGATTGATGGAGCTGATGCAACCATTCAGCATCTTAGCTTGTCTTGTCGTGTACCAAATGTAACTGGGAGGGGGTTTATTGAGGTGGAGGATCATGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTTGCAGAACAAGAAGTTTGTTCAGAGATCTGCAATCTGGAGAATGTGATTGAGGCAACTGAAACCACTGATGACATCCACGTAAAAAACCTGCAGATGGAAGAAAAGAGTCGAGCTTTGGATTTCTTACAAGAAATGGGTTGGCTCCTTCATAGAAGTCAAGTGAAAGTTAGGCTAGGGCCCATGGCTCCTATCCATGATCTCTTCCAATTCAATCGGTTCGTGTGGCTCGTTGACTTTTCCATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTCTTGGACATTATATTTGAGGGTGTTGTTGATGCAGGAGAGCATGCCTCCATTGAGCTTGCATTGTTGGACATGAGTCTTCTACACAGAGCTGTAAAGAGAAACTGTAGGCCTATGGTAGACCTACTGTTAAGATTTGTGCCAGTTAAAACCTCAGATGGTGAAGACAGTGAAGTGAAGCAAGTTGACAAGGCCCTTGACAGATTCTTATTTAGACCTGATACCGTTGGGCCGGCTGGATTGACTCCTCTTCATGTTGCAGCAAGTATGAGTGGCTCGGAGACCGTGTTGGATGCATTAACTGATGATCCAGGAATGGTAGGAATTGAGGCATGGAAAAGTGCCCGCGACAGTTCAGGTTTGACCCCCAACGACTATGCATGTCTTCGGGGCCATTACTCCTACATTCAACTTGTCCAGAAGAAGACCAACAAAAAAGGTGAAAGACAACATGTGGTTGATATCCCTGGCACTGTTGTAGATAGTGACACAAAGCAGAAGCAATCAGATGAACATAGGACATGCAAAGTTTCAAGTTTACAGACTGAGAAGATTGAAACCACAGCAATGCCACGTCAATGTGGGGTATGCCAGCACAAGATGGCTTATAGTGGCATGAGAACAGCACTGGTTTATAGGCCAGTCATGCTCTCCATGGTGACCATAGCAgctgtgtgtgtctgtgtggcTTTGCTCTTCAAAAGCTCACCTAGAGTTTACTATGTGTTCCAGCCCTTCAACTGGGAATCACTGGAGTATGGGGCAATATAA 3120 0.4356 MEAEFGGKNQYLYGPVVSGMKKAVGNGKGNLEWDLNDWKWDGDLFTAQSLNSVPSDCRSRQFFPPHPEMPAKNANPSTDLSSSIFYSGEGKRELEKRRRGVIVEEGEGEGLNDEGGSLSLNLGGHGYPLMVEGEEKSGKKTKVIGTTTTATTTSNRAICQVQDCRADLSNAKDYHRRHKVCEVHSKAAMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVTVVNEGSLNDERGSNYLLMSLLRILTNLHSNGSDHTRNQDILSHLLRNLASLAGPINGRSLASLLEESKGLVNAGTPGAAHDKTNLNSNGPETSRPSGSSIKTNNGFISQDPPISMAQCETVHANGRTQKCIPSADGGVRNLKPPSGALLSSASQSRDSLPSQLTAAETTVGRDSLNNIDLNNVYNDIQNTVENPKKPCPSVASKMVSIDHPSWLQCDSLKSRPPQTSRNSDSTSTQSPSSSSGEAQSCTDRIVFKLFGKDPNDFPLLLRSQILNWLSHSPTEIESYIRPGCIILTIYLCLEKSAWEELYCNLGSSLRKLLDASNDSFWRTGWVYARMQHSVAFLYNGQVVLDMPLCIKSPQHCRISCIKPLAVPANASAQFIVKGFNLSQSSTRLLCALEGKYLVHNSCHDLIDGADATIQHLSLSCRVPNVTGRGFIEVEDHGLSSCSFPFIVAEQEVCSEICNLENVIEATETTDDIHVKNLQMEEKSRALDFLQEMGWLLHRSQVKVRLGPMAPIHDLFQFNRFVWLVDFSMDHGWCAVMKKLLDIIFEGVVDAGEHASIELALLDMSLLHRAVKRNCRPMVDLLLRFVPVKTSDGEDSEVKQVDKALDRFLFRPDTVGPAGLTPLHVAASMSGSETVLDALTDDPGMVGIEAWKSARDSSGLTPNDYACLRGHYSYIQLVQKKTNKKGERQHVVDIPGTVVDSDTKQKQSDEHRTCKVSSLQTEKIETTAMPRQCGVCQHKMAYSGMRTALVYRPVMLSMVTIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGAI 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0485 1039 Pfam SBP domain 159 232 IPR004333 GO:0003677
Ssu6g0485 1039 MobiDBLite consensus disorder prediction 371 400 - -
Ssu6g0485 1039 Gene3D - 780 938 IPR036770 -
Ssu6g0485 1039 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677
Ssu6g0485 1039 MobiDBLite consensus disorder prediction 310 339 - -
Ssu6g0485 1039 SUPERFAMILY Ankyrin repeat 807 921 IPR036770 -
Ssu6g0485 1039 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 1038 IPR044817 GO:0003677
Ssu6g0485 1039 Gene3D - 150 220 IPR036893 GO:0003677|GO:0005634
Ssu6g0485 1039 MobiDBLite consensus disorder prediction 317 339 - -
Ssu6g0485 1039 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 20 1038 - -
Ssu6g0485 1039 MobiDBLite consensus disorder prediction 384 400 - -
Ssu6g0485 1039 MobiDBLite consensus disorder prediction 456 484 - -
Ssu6g0485 1039 SUPERFAMILY SBT domain 157 238 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0485 Ssu-Chr6 7512415 7519087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0485 26 1038 SBP-box Gene Family AT3G60030 45.922 0.0 779
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu6g0485 SBP 3.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0485 - - gsj:114419913 1704.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0485 6 7512415 7519087 Ssu6g0485 6 7512415 7519087 ECH
Ssu6g0485 6 7512415 7519087 Ssu1g1694 1 41492741 41502109 PCT